View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5709-36 (Length: 126)

Name: Solexa-NF5709-36
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5709-36
Solexa-NF5709-36
[»] chr3 (1 HSPs)
chr3 (8-119)||(31580406-31580517)
[»] chr8 (1 HSPs)
chr8 (8-46)||(13018455-13018493)
[»] chr1 (1 HSPs)
chr1 (8-45)||(10039657-10039694)
[»] chr6 (1 HSPs)
chr6 (8-44)||(33134301-33134337)
[»] chr2 (1 HSPs)
chr2 (8-43)||(248085-248120)


Alignment Details
Target: chr3 (Bit Score: 100; Significance: 7e-50; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 7e-50
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 31580406 - 31580517
Alignment:
Q  8 taaacaatgcccttaagaaacttgttaacaagacccttacttctatcacacacaaaaaataaccaatgttttataaaactttattttctaatacatcttt 107  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31580406 taaacaatacccttaagacacttgttaacaagacccttacttctatcacacacaaaaaataaccaatgttttataaaactttattttctaatacatcttt 31580505  T
Q  108 cttcttcttctc 119  Q
     |||||||||||    
T  31580506 tttcttcttctc 31580517  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 13018493 - 13018455
Alignment:
Q  8 taaacaatgcccttaagaaacttgttaacaagaccctta 46  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  13018493 taaacaatgcccttaggacacttgttaacaagaccctta 13018455  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 10039694 - 10039657
Alignment:
Q  8 taaacaatgcccttaagaaacttgttaacaagaccctt 45  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  10039694 taaacaatgtccttaagatacttgttaacaagaccctt 10039657  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 33134301 - 33134337
Alignment:
Q  8 taaacaatgcccttaagaaacttgttaacaagaccct 44  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  33134301 taaacaatgcctttaagacacttgttaacaagaccct 33134337  T

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Target: chr2 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 248120 - 248085
Alignment:
Q  8 taaacaatgcccttaagaaacttgttaacaagaccc 43  Q
    |||||||||||||||||| |||||||| ||||||||    
T  248120 taaacaatgcccttaagacacttgttagcaagaccc 248085  T

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