View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5709-38 (Length: 95)
Name: Solexa-NF5709-38
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5709-38 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 81; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 1e-38
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 45846334 - 45846422
Alignment:
| Q |
7 |
aggagagtgaatcttttggcaccaaaagcttgtccacaaataggttccattccaacggcgagaccagagaggattgagtaaccggtaat |
95 |
Q |
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| T |
45846334 |
aggagagtgaatctttttgcaccaaaagcttgtccacaaataggttccattccaacggcgagaccggagaggattgagtaaccggtaat |
45846422 |
T |
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Target: chr5 (Bit Score: 48; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-19
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 2989912 - 2989837
Alignment:
| Q |
14 |
tgaatcttttggcaccaaaagcttgtccacaaataggttccattccaacggcgagaccagagaggattgagtaacc |
89 |
Q |
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| T |
2989912 |
tgaatcttttagcaccaaaagcttgaccacaaataggttccattcccatggcaagaccagagagaatggagtaacc |
2989837 |
T |
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Target: scaffold0039 (Bit Score: 40; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 23780 - 23701
Alignment:
| Q |
10 |
agagtgaatcttttggcaccaaaagcttgtccacaaataggttccattccaacggcgagaccagagaggattgagtaacc |
89 |
Q |
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| T |
23780 |
agagtgaattttttagcaccaaaagcttgaccacaaattggttccataccaacagcaagaccagaaagaatggagtaacc |
23701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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