View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5709-7 (Length: 221)

Name: Solexa-NF5709-7
Description: NF5709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5709-7
Solexa-NF5709-7
[»] chr2 (2 HSPs)
chr2 (48-221)||(6197635-6197808)
chr2 (8-46)||(6197098-6197136)


Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 48 - 221
Target Start/End: Original strand, 6197635 - 6197808
Alignment:
Q  48 taataataagggaaaaattgccagagctgagaaccactcttcaatcctaatccattctcaatgatttctgtattctatttttctcaacttccacttttct 147  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6197635 taataataaggggaaaattgctagagctgagaaccactcttcaatcctaatccattctcaatgatttctgtattctatttttctcaacttccacttttct 6197734  T
Q  148 gttcatttttattcaaaatatgaattcccatcatattcattagttactgggttaaccaatttgagttttgtctg 221  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6197735 gttcatttttattcaaaatatgaattcccatcattttcattagttactgggttaaccaatttgagttttgtctg 6197808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 6197098 - 6197136
Alignment:
Q  8 gagacaagtgacgttaccaagtacgaggcaataatatta 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6197098 gagacaagtgacgttaccaagtacgaggcaataatatta 6197136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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