View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5795-14 (Length: 67)
Name: Solexa-NF5795-14
Description: NF5795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5795-14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 57; Significance: 1e-24; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-24
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 38243589 - 38243533
Alignment:
| Q |
8 |
tctataaggccagattataaaggaggttggttatgttgttatgattgtacacagtgc |
64 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38243589 |
tctataaggccagattataaaggaggttggttatgttgttatgattgtacacagtgc |
38243533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 38248738 - 38248681
Alignment:
| Q |
7 |
atctataaggccagattataaaggaggttggttatgttgttatgattgtacacagtgc |
64 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
38248738 |
atctattaggccagattataaaggaggtttgttatgttgttatgattctacacggtgc |
38248681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 38238651 - 38238595
Alignment:
| Q |
8 |
tctataaggccagattataaaggaggttggttatgttgttatgattgtacacagtgc |
64 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||| || ||||||| |
|
|
| T |
38238651 |
tctattaggccagattataaaggaggtttgttatgttgttatgattctaaacagtgc |
38238595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 38214699 - 38214644
Alignment:
| Q |
8 |
tctataaggccagattataaaggaggttggttatgttgttatgattgtacacagtg |
63 |
Q |
| |
|
||||| ||| |||||||| ||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
38214699 |
tctattaggtcagattatgaaggaggtttgttatgttgttatgattatacacagtg |
38214644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 38227115 - 38227079
Alignment:
| Q |
15 |
ggccagattataaaggaggttggttatgttgttatga |
51 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38227115 |
ggccagattataaaggaggtttgttatgttgttatga |
38227079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 38220738 - 38220685
Alignment:
| Q |
11 |
ataaggccagattataaaggaggttggttatgttgttatgattgtacacagtgc |
64 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||| | || ||||||| |
|
|
| T |
38220738 |
ataaggtcagattataaaggaggtttcttatgttgttatgactctaaacagtgc |
38220685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 38253848 - 38253808
Alignment:
| Q |
12 |
taaggccagattataaaggaggttggttatgttgttatgat |
52 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
38253848 |
taaggcctgattataaaggaggtatgttatgttgttatgat |
38253808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University