View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5795-2 (Length: 167)
Name: Solexa-NF5795-2
Description: NF5795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5795-2 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 1e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 1e-85
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 31658968 - 31659127
Alignment:
| Q |
8 |
atatatagtgatcaagcttttttatttaagaaatacaataccttatggatggttttagtttatttgaacttaacaattattcgggatgacaacattacaa |
107 |
Q |
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| T |
31658968 |
atatatagtgatcaagcttttttatttaagaaatacaataccttatggatggttttagtttatttgaacttaacaattattcgggatgacaacattacaa |
31659067 |
T |
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| Q |
108 |
gcactagcaacctctctagctctaggagagttaacatattgactgtaatctgggtctctg |
167 |
Q |
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| T |
31659068 |
gcactagcaacctctctagctctaggagagttaacatattgactgtaatctgggtctctg |
31659127 |
T |
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Target: chr7; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 55 - 148
Target Start/End: Original strand, 31671749 - 31671839
Alignment:
| Q |
55 |
gatggttttagtttatttgaacttaacaattattcgggatgacaacattacaagcactagcaacctctctagctctaggagagttaacatattg |
148 |
Q |
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| T |
31671749 |
gatggttttagtttacttgaacttaaca---atttgggatgacaacattgcaagcactagcaacccttttagaaccaggagagttaacatattg |
31671839 |
T |
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