View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5795-4 (Length: 150)

Name: Solexa-NF5795-4
Description: NF5795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5795-4
Solexa-NF5795-4
[»] chr8 (20 HSPs)
chr8 (7-131)||(1083288-1083412)
chr8 (58-150)||(40502190-40502282)
chr8 (58-150)||(40502402-40502494)
chr8 (61-148)||(1083064-1083151)
chr8 (7-63)||(40502663-40502719)
chr8 (58-150)||(24919886-24919978)
chr8 (97-148)||(24919464-24919515)
chr8 (58-125)||(31391151-31391218)
chr8 (58-125)||(31391575-31391642)
chr8 (7-63)||(24921028-24921084)
chr8 (58-124)||(31391363-31391429)
chr8 (97-150)||(24920098-24920151)
chr8 (84-148)||(1082644-1082708)
chr8 (84-148)||(1082854-1082918)
chr8 (58-150)||(24919674-24919766)
chr8 (58-125)||(31392000-31392067)
chr8 (58-125)||(31391787-31391855)
chr8 (58-125)||(24920757-24920824)
chr8 (7-51)||(31390955-31390999)
chr8 (58-123)||(24920336-24920401)
[»] chr6 (11 HSPs)
chr6 (58-150)||(15342085-15342177)
chr6 (58-150)||(15341873-15341965)
chr6 (58-149)||(15341662-15341753)
chr6 (58-150)||(19846035-19846127)
chr6 (58-150)||(19846247-19846339)
chr6 (7-63)||(15342345-15342401)
chr6 (61-150)||(19845831-19845920)
chr6 (88-150)||(14524065-14524127)
chr6 (7-63)||(19845570-19845626)
chr6 (97-148)||(15341452-15341503)
chr6 (114-145)||(2430670-2430701)
[»] chr2 (2 HSPs)
chr2 (58-150)||(11355468-11355560)
chr2 (75-150)||(11355273-11355348)
[»] chr3 (15 HSPs)
chr3 (58-150)||(25010492-25010584)
chr3 (75-150)||(25010298-25010373)
chr3 (58-144)||(34164480-34164566)
chr3 (58-150)||(34164268-34164360)
chr3 (7-63)||(4267663-4267719)
chr3 (58-125)||(4268345-4268412)
chr3 (58-124)||(4268769-4268835)
chr3 (7-63)||(13819000-13819056)
chr3 (60-125)||(12212147-12212212)
chr3 (58-125)||(13818731-13818798)
chr3 (58-144)||(12211509-12211595)
chr3 (60-125)||(12211723-12211788)
chr3 (58-123)||(13815382-13815447)
chr3 (58-125)||(4268558-4268625)
chr3 (114-145)||(27335532-27335563)
[»] scaffold0012 (2 HSPs)
scaffold0012 (58-148)||(142299-142389)
scaffold0012 (61-150)||(142083-142172)
[»] chr1 (16 HSPs)
chr1 (58-150)||(24708016-24708108)
chr1 (58-144)||(17227654-17227740)
chr1 (61-148)||(29497069-29497156)
chr1 (7-63)||(29496808-29496864)
chr1 (7-63)||(19148799-19148855)
chr1 (7-63)||(23675853-23675909)
chr1 (58-150)||(17227442-17227534)
chr1 (84-148)||(29497302-29497366)
chr1 (58-125)||(17225148-17225215)
chr1 (58-125)||(19148106-19148173)
chr1 (58-125)||(23675160-23675227)
chr1 (58-124)||(19147683-19147749)
chr1 (106-144)||(17227280-17227318)
chr1 (7-63)||(24707787-24707847)
chr1 (58-125)||(19147893-19147960)
chr1 (58-125)||(23674947-23675014)
[»] chr7 (30 HSPs)
chr7 (7-63)||(41549199-41549255)
chr7 (58-125)||(22143610-22143677)
chr7 (58-125)||(22143822-22143889)
chr7 (58-125)||(22144034-22144101)
chr7 (58-125)||(22144246-22144313)
chr7 (58-125)||(22144457-22144524)
chr7 (58-125)||(22146415-22146482)
chr7 (58-125)||(22146627-22146694)
chr7 (58-125)||(22146839-22146906)
chr7 (58-125)||(22147051-22147118)
chr7 (58-125)||(22147263-22147330)
chr7 (58-125)||(22147475-22147542)
chr7 (58-125)||(22147899-22147966)
chr7 (58-125)||(22213219-22213286)
chr7 (58-125)||(22213431-22213498)
chr7 (58-125)||(22213852-22213919)
chr7 (58-125)||(22214064-22214131)
chr7 (58-125)||(22214276-22214343)
chr7 (58-125)||(22214488-22214555)
chr7 (58-125)||(22214912-22214979)
chr7 (58-125)||(22215124-22215191)
chr7 (58-125)||(22147687-22147754)
chr7 (58-125)||(22148111-22148178)
chr7 (58-125)||(22213007-22213074)
chr7 (58-125)||(22214700-22214767)
chr7 (58-125)||(41549881-41549948)
chr7 (58-124)||(12490914-12490980)
chr7 (65-125)||(22212802-22212862)
chr7 (58-125)||(22213643-22213709)
chr7 (58-125)||(41550094-41550161)
[»] chr4 (3 HSPs)
chr4 (7-63)||(55042499-55042555)
chr4 (58-125)||(55043181-55043248)
chr4 (58-125)||(55043394-55043461)
[»] scaffold0186 (3 HSPs)
scaffold0186 (7-63)||(27693-27749)
scaffold0186 (59-125)||(27952-28018)
scaffold0186 (58-125)||(28587-28654)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 2e-61; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 2e-61
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 1083412 - 1083288
Alignment:
7 agttattaacattgttgaactatcctgcagtttaatgagtcaytctgcatgttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggt 106  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1083412 agttattaacattgttgaactatcctgcagtttaatgagtcactctgcatgttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggt 1083313  T
107 aaactagccaaatatatggtttgtg 131  Q
    ||||||| |||||||||||||||||    
1083312 aaactagtcaaatatatggtttgtg 1083288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 7e-34
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 40502282 - 40502190
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggt 150  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||    
40502282 ttatgtgttcgattcgcctaaaacaagattatttatacttgggaaagataaactagccaaatatatggtctgtgtgaccacattttttaaggt 40502190  T

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Target: chr8; HSP #3
Raw Score: 73; E-Value: 7e-34
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 40502494 - 40502402
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggt 150  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||    
40502494 ttatgtgtttgattcgcttaaaacaagattatttatacttgggaaagataaactagccaaatatatggtctgtgtgaccacattttttaaggt 40502402  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 1083151 - 1083064
Alignment:
61 tgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaag 148  Q
    |||||||||||| | |||||  ||||||||||||| |||||||| ||||||||||| |||||| || |||||||||||||||||||||    
1083151 tgtgttcgattcacctaaaatgagattatttatacctgggaaagttaaactagccagatatatagtctgtgtaaccacattttttaag 1083064  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 40502719 - 40502663
Alignment:
7 agttattaacattgttgaactatcctgcagtttaatgagtcaytctgcatgttatgt 63  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
40502719 agttactaacattgttgaactatcctgcagtttaatgagtcattctgcatgttatgt 40502663  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 24919978 - 24919886
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggt 150  Q
    |||||| |||||||| ||||||||  ||||| |||||  |||||||| ||||||| ||||||||||| | ||||| |||||||||||||||||    
24919978 ttatgtcttcgattcacttaaaacgggattagttatatctgggaaagataaactaaccaaatatatgttctgtgtgaccacattttttaaggt 24919886  T

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Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 24919515 - 24919464
Alignment:
97 tgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaag 148  Q
    |||||||| ||||||||||||||||||||| ||||| |||||||||||||||    
24919515 tgggaaagataaactagccaaatatatggtctgtgttaccacattttttaag 24919464  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 31391151 - 31391218
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
31391151 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 31391218  T

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Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 31391575 - 31391642
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
31391575 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 31391642  T

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Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 24921084 - 24921028
Alignment:
7 agttattaacattgttgaactatcctgcagtttaatgagtcaytctgcatgttatgt 63  Q
    ||||| |||||||||||||||||||| ||| ||||||||||| ||||| ||||||||    
24921084 agttactaacattgttgaactatcctacagcttaatgagtcactctgcctgttatgt 24921028  T

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Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 31391363 - 31391429
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatg 124  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | |||||||||||||||||||    
31391363 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatg 31391429  T

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Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 24920151 - 24920098
Alignment:
97 tgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggt 150  Q
    |||||||| ||||||||||||||||||| | ||||| |||||||||||||||||    
24920151 tgggaaagataaactagccaaatatatgttatgtgtgaccacattttttaaggt 24920098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 1082708 - 1082644
Alignment:
84 gattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaag 148  Q
    ||||||||| || || ||||| ||||||||||| |||||| || |||||||||||||||||||||    
1082708 gattatttacacctgagaaagttaaactagccagatatatagtctgtgtaaccacattttttaag 1082644  T

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Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 1082918 - 1082854
Alignment:
84 gattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaag 148  Q
    |||||||||||| || ||||| |||||||||| ||||||| ||  ||||||||||||||||||||    
1082918 gattatttatacctgagaaagttaaactagcccaatatatagtccgtgtaaccacattttttaag 1082854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 24919766 - 24919674
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggt 150  Q
    |||||| |||||||| | ||||||  ||||| |||||  |||||||| ||||||||| ||||||||| | | ||| |||||||||||||||||    
24919766 ttatgtcttcgattcacctaaaacgggattagttatatctgggaaagataaactagctaaatatatgttctctgtgaccacattttttaaggt 24919674  T

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Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 31392000 - 31392067
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | |||||||||||| |||||||    
31392000 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaattatatgg 31392067  T

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Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 31391787 - 31391855
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatac-ttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || | ||||| | ||||||||||||||||||||    
31391787 ttatgtgttcgattctcataaaacaggattagttacacatggggaatgataaactagccaaatatatgg 31391855  T

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Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 24920824 - 24920757
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||| | ||||||||||||| ||| || || ||| | ||||||| ||||||||||||    
24920824 ttatgtgttcgattcgcgtaaaacaagattagttacacctgagaatgataaactaaccaaatatatgg 24920757  T

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Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 31390955 - 31390999
Alignment:
7 agttattaacattgttgaactatcctgcagtttaatgagtcaytc 51  Q
    ||||||||||||||||||||| |||| || |||||||||||| ||    
31390955 agttattaacattgttgaactttcctacattttaatgagtcactc 31390999  T

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Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 24920401 - 24920336
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatat 123  Q
    ||||||||||||||  | ||||||||||||  ||| || |||||| | ||||||||||||||||||    
24920401 ttatgtgttcgatttgcgtaaaacaagatttgttacacgtgggaatgataaactagccaaatatat 24920336  T

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Target: chr6 (Bit Score: 81; Significance: 1e-38; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 1e-38
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 15342177 - 15342085
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggt 150  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
15342177 ttatgtgttcgattcgcttaaaacaagattatttatacttgggaaagataaactagccaaatgtatggtttgtgtaaccacattttttaaggt 15342085  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 15341965 - 15341873
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggt 150  Q
    ||||||||||||||| | |||||||||||||||||||||   ||||  ||||||||||||||||||||| ||||| |||||||||||||||||    
15341965 ttatgtgttcgattcgcctaaaacaagattatttatactccagaaatataaactagccaaatatatggtctgtgtgaccacattttttaaggt 15341873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 15341753 - 15341662
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaagg 149  Q
    ||||||||||||||| | |||||| |||||||||| || |||||||| ||||||| ||||||||||||| ||||| | ||||||||||||||    
15341753 ttatgtgttcgattcgcctaaaacgagattatttacacctgggaaagataaactacccaaatatatggtctgtgtgatcacattttttaagg 15341662  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 19846035 - 19846127
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggt 150  Q
    ||||||||| ||||| | ||||||  |||||||||||| |||||||| ||||||||||||||||||||| ||||| | ||||| |||||||||    
19846035 ttatgtgtttgattcccctaaaacgggattatttatacctgggaaagataaactagccaaatatatggtctgtgtgatcacatattttaaggt 19846127  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 19846247 - 19846339
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggt 150  Q
    ||||||||||||||| | ||||||  |||||||||||| || ||||| ||||||||||||||||||| | ||| | |||||||||||||||||    
19846247 ttatgtgttcgattcgcctaaaacgggattatttatacctgagaaagataaactagccaaatatatgatctgtctgaccacattttttaaggt 19846339  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 15342401 - 15342345
Alignment:
7 agttattaacattgttgaactatcctgcagtttaatgagtcaytctgcatgttatgt 63  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||    
15342401 agttactaacattgttgaactatcctgcagtttaatgagtcactctacatgttatgt 15342345  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 150
Target Start/End: Original strand, 19845831 - 19845920
Alignment:
61 tgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggt 150  Q
    |||||||||||| | |||||   |||||||||||| ||| |||| |||||||| |||||||||||||||||| || ||||| ||||||||    
19845831 tgtgttcgattcgcctaaaatgggattatttatacctggaaaagttaaactagtcaaatatatggtttgtgtgacgacattctttaaggt 19845920  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 14524065 - 14524127
Alignment:
88 atttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggt 150  Q
    ||||||||||||||||| |||| |||| ||||||||||| ||||| |||||||| ||||||||    
14524065 atttatacttgggaaagataaattagctaaatatatggtctgtgtgaccacattgtttaaggt 14524127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 19845570 - 19845626
Alignment:
7 agttattaacattgttgaactatcctgcagtttaatgagtcaytctgcatgttatgt 63  Q
    ||||| |||||||||| ||||||||| ||||||||||||||| ||| | ||||||||    
19845570 agttactaacattgttcaactatcctacagtttaatgagtcactctacctgttatgt 19845626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 15341503 - 15341452
Alignment:
97 tgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaag 148  Q
    |||||||| |||||||| |||||||||||| ||||| | |||||||||||||    
15341503 tgggaaagataaactagtcaaatatatggtctgtgtgaacacattttttaag 15341452  T

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Target: chr6; HSP #11
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 2430701 - 2430670
Alignment:
114 ccaaatatatggtttgtgtaaccacatttttt 145  Q
    ||||||||||||||||||| ||||||||||||    
2430701 ccaaatatatggtttgtgtgaccacatttttt 2430670  T

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Target: chr2 (Bit Score: 81; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 1e-38
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 11355468 - 11355560
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggt 150  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
11355468 ttatgtgttcgattcacttaaaacaagattatttatacttgggaaagataaactagccaaatatatggtttgtgtaaccacattttgtaaggt 11355560  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 7e-31
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 11355273 - 11355348
Alignment:
75 ttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggt 150  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
11355273 ttaaaacaagattatttatacttgggaaagataaactagacaaatatatggtttgtgtaaccacattttttaaggt 11355348  T

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Target: chr3 (Bit Score: 77; Significance: 3e-36; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 3e-36
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 25010492 - 25010584
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggt 150  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||    
25010492 ttatgtgttcgattcgcttaaaacaagattatttatacttgggaaagataaaatagtcaaatatatggtttgtgtaaccacattttttaaggt 25010584  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 25010298 - 25010373
Alignment:
75 ttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggt 150  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||    
25010298 ttaaaacaagattatttatacttgggaaagataaactagccaaatttatggtttgtgtaaccacatttgttaaggt 25010373  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 34164480 - 34164566
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttt 144  Q
    ||||||||||||||| | |||||| ||||||||||||| ||| |||| |||||||| |||||||||||||||||| |||| ||||||    
34164480 ttatgtgttcgattcgcctaaaacgagattatttatacctggaaaagataaactagtcaaatatatggtttgtgtgaccatattttt 34164566  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 34164268 - 34164360
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggt 150  Q
    |||||||  |||||| | |||||||  ||||||||||| |||||||| ||||||||||||||||||||| ||||| |||||||||| ||||||    
34164268 ttatgtgcccgattcgcctaaaacagaattatttatacatgggaaagataaactagccaaatatatggtctgtgtgaccacattttataaggt 34164360  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 4267663 - 4267719
Alignment:
7 agttattaacattgttgaactatcctgcagtttaatgagtcaytctgcatgttatgt 63  Q
    |||||||||||||||||||||||||| ||||||||||||||| | ||| ||||||||    
4267663 agttattaacattgttgaactatcctacagtttaatgagtcactgtgcctgttatgt 4267719  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 4268345 - 4268412
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| |  |||||| | ||||||||||||||||||||    
4268345 ttatgtgttcgattctcgtaaaacatgattagttacagctgggaatgataaactagccaaatatatgg 4268412  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 4268769 - 4268835
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatg 124  Q
    ||||||||||||||| | ||||||| ||||| ||| || |||||| | |||||||||||||||||||    
4268769 ttatgtgttcgattcgcgtaaaacaggattagttacacctgggaatgataaactagccaaatatatg 4268835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 13819056 - 13819000
Alignment:
7 agttattaacattgttgaactatcctgcagtttaatgagtcaytctgcatgttatgt 63  Q
    ||||| |||||||||||||||||||| ||||||||||||||| | ||  ||||||||    
13819056 agttactaacattgttgaactatcctacagtttaatgagtcactgtgtctgttatgt 13819000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 12212147 - 12212212
Alignment:
60 atgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||| | ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
12212147 atgtgttcgattcgcgtaaaacaggattagttacacctgggaatgataaactagccaaatatatgg 12212212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 13818798 - 13818731
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||| | ||||||| ||| | ||| || |||||| | ||||||||||||||||||||    
13818798 ttatgtgttcgattcgcgtaaaacaggataagttacacctgggaatgataaactagccaaatatatgg 13818731  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 12211509 - 12211595
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttt 144  Q
    ||||||||| ||||| | |||||| |||||| ||| || | |||||| || ||||||||||||||||| |||| | |||||| ||||    
12211509 ttatgtgtttgattcacataaaacgagattagttacacctcggaaagatacactagccaaatatatgggttgtatgaccacaatttt 12211595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 12211723 - 12211788
Alignment:
60 atgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||| | ||||||| ||||| ||| |  |||||| | ||||||||||||||||||||    
12211723 atgtgttcgattcgcgtaaaacaggattagttacatctgggaatgataaactagccaaatatatgg 12211788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 13815447 - 13815382
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatat 123  Q
    ||||||||||||||| | ||||||| ||||  ||| || |||||| | ||||||||||||||||||    
13815447 ttatgtgttcgattcgcgtaaaacaggatttgttacacctgggaatgataaactagccaaatatat 13815382  T

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Target: chr3; HSP #14
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 4268558 - 4268625
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    |||||||||||||| || ||||||| ||||| ||| |  || ||| | ||||||||||||||||||||    
4268558 ttatgtgttcgattatcgtaaaacaggattagttacaactgagaatgataaactagccaaatatatgg 4268625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 27335563 - 27335532
Alignment:
114 ccaaatatatggtttgtgtaaccacatttttt 145  Q
    ||||||||||||||||||| ||||||||||||    
27335563 ccaaatatatggtttgtgtgaccacatttttt 27335532  T

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Target: scaffold0012 (Bit Score: 63; Significance: 7e-28; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 63; E-Value: 7e-28
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 142389 - 142299
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaag 148  Q
    ||||||||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| ||||||||| |||||    
142389 ttatgtgttcgattcgcctaaaacaagattatttatacctgggaaagataaactagccaaatatatggtctgtgtgaccacatttattaag 142299  T

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Target: scaffold0012; HSP #2
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 61 - 150
Target Start/End: Complemental strand, 142172 - 142083
Alignment:
61 tgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggt 150  Q
    |||||||||||| | ||||| |||||||||||||| |||||||| ||||||||||||||||| ||| ||||| ||||||||| |||||||    
142172 tgtgttcgattcgcctaaaagaagattatttatacatgggaaagataaactagccaaatatacggtctgtgtgaccacatttgttaaggt 142083  T

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Target: chr1 (Bit Score: 61; Significance: 1e-26; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 24708016 - 24708108
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggt 150  Q
    ||||||||||||||| | | |||||| |||||||||||||||||||| ||||||||| ||||||||||| ||||| |||||||||||||||||    
24708016 ttatgtgttcgattcgcctgaaacaatattatttatacttgggaaagataaactagcaaaatatatggtctgtgtgaccacattttttaaggt 24708108  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 17227654 - 17227740
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttt 144  Q
    ||||||||||||||| | ||||||  |||||||||||  |||||||| ||||||||||||||||||||||||||| |||| ||||||    
17227654 ttatgtgttcgattcgcctaaaacgggattatttatatctgggaaagataaactagccaaatatatggtttgtgtgaccatattttt 17227740  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 29497069 - 29497156
Alignment:
61 tgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaag 148  Q
    |||||||||||| | |||||  ||||||||||||| |||||||| ||||||||||| |||||| || ||||||| |||||||||||||    
29497069 tgtgttcgattcgcctaaaatgagattatttatacctgggaaagttaaactagccagatatatagtatgtgtaagcacattttttaag 29497156  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 29496808 - 29496864
Alignment:
7 agttattaacattgttgaactatcctgcagtttaatgagtcaytctgcatgttatgt 63  Q
    ||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||    
29496808 agttactaacattgttgaactatcctacagtttaatgagtcactctgcatgttatgt 29496864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 19148855 - 19148799
Alignment:
7 agttattaacattgttgaactatcctgcagtttaatgagtcaytctgcatgttatgt 63  Q
    |||||||||||||||||||||||||| ||||||||||||||| | ||| ||||||||    
19148855 agttattaacattgttgaactatcctacagtttaatgagtcattgtgcctgttatgt 19148799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 23675909 - 23675853
Alignment:
7 agttattaacattgttgaactatcctgcagtttaatgagtcaytctgcatgttatgt 63  Q
    |||||||||||||||||||||||||| ||||||||||||||| | ||| ||||||||    
23675909 agttattaacattgttgaactatcctacagtttaatgagtcactgtgcctgttatgt 23675853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 17227442 - 17227534
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggt 150  Q
    ||||||||| ||||| | |||||||  ||||||||||| |  ||||| |  |||||||||||||||||| ||||| |||||||||||||||||    
17227442 ttatgtgtttgattcgcctaaaacagaattatttatacctaagaaagatttactagccaaatatatggtctgtgtgaccacattttttaaggt 17227534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 29497302 - 29497366
Alignment:
84 gattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaag 148  Q
    |||||||||||| || ||||| ||||||||||| |||||| || ||||||| |||||||||||||    
29497302 gattatttatacctgagaaagttaaactagccagatatatagtctgtgtaagcacattttttaag 29497366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 17225148 - 17225215
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||| | ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
17225148 ttatgtgttcgattcgcgtaaaacaggattagttacacctgggaatgataaactagccaaatatatgg 17225215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 19148173 - 19148106
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| |  |||||| | ||||||||||||||||||||    
19148173 ttatgtgttcgattctcgtaaaacatgattagttacagctgggaatgataaactagccaaatatatgg 19148106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 23675227 - 23675160
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| |  |||||| | ||||||||||||||||||||    
23675227 ttatgtgttcgattctcgtaaaacatgattagttacagctgggaatgataaactagccaaatatatgg 23675160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 19147749 - 19147683
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatg 124  Q
    ||||||||||||||| | ||||||| ||||| ||| || |||||| | |||||||||||||||||||    
19147749 ttatgtgttcgattcgcgtaaaacaggattagttacacctgggaatgataaactagccaaatatatg 19147683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 17227280 - 17227318
Alignment:
106 taaactagccaaatatatggtttgtgtaaccacattttt 144  Q
    ||||||||||||||||||||| ||||| |||||||||||    
17227280 taaactagccaaatatatggtatgtgtgaccacattttt 17227318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 24707787 - 24707847
Alignment:
7 agttattaacattgttgaactat----cctgcagtttaatgagtcaytctgcatgttatgt 63  Q
    ||||| |||||||||||||||||    | ||||||||| ||||||| ||||||||||||||    
24707787 agttactaacattgttgaactatatatcttgcagtttattgagtcactctgcatgttatgt 24707847  T

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Target: chr1; HSP #15
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 19147960 - 19147893
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    |||||||||||||| || ||||||| ||||| ||| |  || ||| | ||||||||||||||||||||    
19147960 ttatgtgttcgattatcgtaaaacaggattagttacaactgagaatgataaactagccaaatatatgg 19147893  T

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Target: chr1; HSP #16
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 23675014 - 23674947
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    |||||||||||||| || ||||||| ||||| ||| |  || ||| | ||||||||||||||||||||    
23675014 ttatgtgttcgattatcgtaaaacaggattagttacaactgagaatgataaactagccaaatatatgg 23674947  T

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Target: chr7 (Bit Score: 43; Significance: 7e-16; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 41549199 - 41549255
Alignment:
7 agttattaacattgttgaactatcctgcagtttaatgagtcaytctgcatgttatgt 63  Q
    |||||||||||||||||||||||||| ||||||||||||||| | ||| ||||||||    
41549199 agttattaacattgttgaactatcctacagtttaatgagtcactgtgcctgttatgt 41549255  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22143610 - 22143677
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22143610 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22143677  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22143822 - 22143889
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22143822 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22143889  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22144034 - 22144101
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22144034 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22144101  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22144246 - 22144313
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22144246 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22144313  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22144457 - 22144524
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22144457 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22144524  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22146415 - 22146482
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22146415 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22146482  T

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Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22146627 - 22146694
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22146627 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22146694  T

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Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22146839 - 22146906
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22146839 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22146906  T

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Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22147051 - 22147118
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22147051 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22147118  T

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Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22147263 - 22147330
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22147263 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22147330  T

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Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22147475 - 22147542
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22147475 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22147542  T

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Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22147899 - 22147966
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22147899 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22147966  T

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Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22213219 - 22213286
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22213219 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22213286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22213431 - 22213498
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22213431 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22213498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22213852 - 22213919
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22213852 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22213919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22214064 - 22214131
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22214064 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22214131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22214276 - 22214343
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22214276 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22214343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22214488 - 22214555
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22214488 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22214555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22214912 - 22214979
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22214912 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22214979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22215124 - 22215191
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22215124 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22215191  T

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Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22147687 - 22147754
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||| ||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22147687 ttatgtgtttgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22147754  T

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Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22148111 - 22148178
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||| ||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22148111 ttatgtgtttgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22148178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22213007 - 22213074
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||| ||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22213007 ttatgtgtttgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22213074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22214700 - 22214767
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||| ||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22214700 ttatgtgtttgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22214767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 41549881 - 41549948
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| |  |||||| | ||||||||||||||||||||    
41549881 ttatgtgttcgattctcgtaaaacatgattagttacagctgggaatgataaactagccaaatatatgg 41549948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 12490980 - 12490914
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatg 124  Q
    ||||||||| ||||| | ||||||  |||||||||||| || ||||| |||||||||||||||||||    
12490980 ttatgtgtttgattcgcctaaaacgggattatttatacctgagaaagataaactagccaaatatatg 12490914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 22212802 - 22212862
Alignment:
65 ttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    |||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
22212802 ttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22212862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 22213643 - 22213709
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| |||||  || || |||||| | ||||||||||||||||||||    
22213643 ttatgtgttcgattctcataaaacaggatta-gtacacatgggaatgataaactagccaaatatatgg 22213709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 41550094 - 41550161
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    |||||||||||||| || ||||||| ||||| ||| |  || ||| | ||||||||||||||||||||    
41550094 ttatgtgttcgattatcgtaaaacaggattagttacaactgagaatgataaactagccaaatatatgg 41550161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 7e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 55042499 - 55042555
Alignment:
7 agttattaacattgttgaactatcctgcagtttaatgagtcaytctgcatgttatgt 63  Q
    |||||||||||||||||||||||||| ||||||||||||||| | ||| ||||||||    
55042499 agttattaacattgttgaactatcctacagtttaatgagtcactgtgcctgttatgt 55042555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 55043181 - 55043248
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||||| ||||||| ||||| ||| |  |||||| | ||||||||||||||||||||    
55043181 ttatgtgttcgattctcgtaaaacatgattagttacagctgggaatgataaactagccaaatatatgg 55043248  T

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Target: chr4; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 55043394 - 55043461
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    |||||||||||||| || ||||||| ||||| ||| |  || ||| | ||||||||||||||||||||    
55043394 ttatgtgttcgattatcgtaaaacaggattagttacaactgagaatgataaactagccaaatatatgg 55043461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 35; Significance: 0.00000000004; HSPs: 3)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 27693 - 27749
Alignment:
7 agttattaacattgttgaactatcctgcagtttaatgagtcaytctgcatgttatgt 63  Q
    ||||| |||||||||||||||||||| ||||||||||||||| | | | ||||||||    
27693 agttactaacattgttgaactatcctacagtttaatgagtcactgtacctgttatgt 27749  T

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Target: scaffold0186; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 27952 - 28018
Alignment:
59 tatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    |||||||||||||| | ||||||||||||| ||| || || ||| | ||||||||||||||||||||    
27952 tatgtgttcgattcgcgtaaaacaagattagttacacctgagaatgataaactagccaaatatatgg 28018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 28587 - 28654
Alignment:
58 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 125  Q
    ||||||||||||||| | ||||||| ||||| ||| || || ||| | |||||||||||||| |||||    
28587 ttatgtgttcgattcgcgtaaaacaggattagttacacctgtgaatgataaactagccaaatctatgg 28654  T

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