View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5797-1 (Length: 269)
Name: Solexa-NF5797-1
Description: NF5797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5797-1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 269
Target Start/End: Original strand, 40119168 - 40119435
Alignment:
| Q |
8 |
aaatgcatgtccatgtccatgaggtagtagtttattcttttcataattttgcgtgccaatatccatctatctatatatatcgctatctcttcaaactatt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
40119168 |
aaatgcatgtccatgtccatgaggtagtagtttattcttttcataattttgcgtgccaatatccatctat----atatatcgctatctcttcaaactctt |
40119263 |
T |
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| Q |
108 |
-gtcaatctcaatcca----------tctcctctgcataacaaagaaaagaaaatgtcaaccgattcacaactatccacggtactatcccttgctcgttt |
196 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40119264 |
agtcaatctcaatccatccaattccatctcctcggcataacaaagaaaagaaaatgtcaaccgattcacaaccatccacggtactatcccttgctcgttt |
40119363 |
T |
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| Q |
197 |
agccaccctcacagctcacctcctcccctccggcaaccaacaaccctctgatcatcctcctcccccaccctct |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40119364 |
agccaccctcacagctcacctcctcccctccggcaaccaacaaccctctgatca-cctcctcccccaccctct |
40119435 |
T |
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