View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5797-2 (Length: 248)

Name: Solexa-NF5797-2
Description: NF5797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5797-2
Solexa-NF5797-2
[»] chr6 (11 HSPs)
chr6 (6-241)||(2184133-2184368)
chr6 (79-242)||(2184816-2184979)
chr6 (43-231)||(28234446-28234634)
chr6 (104-231)||(28139484-28139611)
chr6 (56-112)||(26861511-26861567)
chr6 (143-234)||(28325463-28325554)
chr6 (79-112)||(28781057-28781090)
chr6 (56-112)||(27593256-27593312)
chr6 (56-112)||(27706638-27706694)
chr6 (143-213)||(29826009-29826079)
chr6 (56-112)||(31284183-31284239)
[»] scaffold0781 (1 HSPs)
scaffold0781 (6-198)||(1-193)
[»] scaffold0038 (2 HSPs)
scaffold0038 (43-231)||(34607-34795)
scaffold0038 (143-234)||(116778-116869)
[»] scaffold0019 (1 HSPs)
scaffold0019 (43-225)||(58405-58587)
[»] scaffold1254 (1 HSPs)
scaffold1254 (79-112)||(153-186)
[»] scaffold0419 (1 HSPs)
scaffold0419 (79-112)||(7443-7476)
[»] scaffold0277 (1 HSPs)
scaffold0277 (79-112)||(13868-13901)


Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 241
Target Start/End: Original strand, 2184133 - 2184368
Alignment:
Q  6 cacaatcatcttcctyctcttcttcatcctcctccaaattcacctataacgtattcctaagtttcagaggagttgacactcgccatggttttaccggcaa 105  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  2184133 cacaatcatcttcctcctcttcttcatcctcctccaaattcacctataacgtgttcctaagtttcagaggagctgacactcgccatggttttaccggcaa 2184232  T
Q  106 tctctacgatgctctacgtcaaagtggagtccacactttcatggatgacgaagagcttcaacgagggggygaaataacaccatcgcttgtgaaagccatt 205  Q
    ||| |||||||||||| || ||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| |||| ||| |||||||||||    
T  2184233 tctttacgatgctctatgtaaaagtggagtccacactttcaaggatgacgaggagcttcaacgagggggtgaaataacagcatcacttatgaaagccatt 2184332  T
Q  206 gaagaatccagaattttcatccctgttttctcaaag 241  Q
    ||||| ||||||||||||||||||||||||||||||    
T  2184333 gaagagtccagaattttcatccctgttttctcaaag 2184368  T

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Target: chr6; HSP #2
Raw Score: 146; E-Value: 2e-77
Query Start/End: Original strand, 79 - 242
Target Start/End: Original strand, 2184816 - 2184979
Alignment:
Q  79 tgacactcgccatggttttaccggcaatctctacgatgctctacgtcaaagtggagtccacactttcatggatgacgaagagcttcaacgagggggygaa 178  Q
    ||||| |||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2184816 tgacattcgcgatggttttaccggcaatctttacgatgctctacgtaaaagtggagtccacactttcatggatgacgaagagcttcaacgagggggtgaa 2184915  T
Q  179 ataacaccatcgcttgtgaaagccattgaagaatccagaattttcatccctgttttctcaaagg 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2184916 ataacaccatcgcttgtgaaagccattgaagaatccagaattttcatccctgttttctcaaagg 2184979  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 231
Target Start/End: Original strand, 28234446 - 28234634
Alignment:
Q  43 attcacctataacgtattcctaagtttcagaggagttgacactcgccatggttttaccggcaatctctacgatgctctacgtcaaagtggagtccacact 142  Q
    |||||||||| |||| ||||| ||||| |||||   |||||||||| ||||||||||||  ||||||||    |||||  |||| |  ||| |||||||     
T  28234446 attcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagggaatccacacc 28234545  T
Q  143 ttcatggatgacgaagagcttcaacgagggggygaaataacaccatcgcttgtgaaagccattgaagaatccagaattttcatccctgt 231  Q
    ||||| ||||||   ||||||||| |||| |  |||||||||||||| ||| | || ||||||||||| || || |||||||| |||||    
T  28234546 ttcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgt 28234634  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 231
Target Start/End: Original strand, 28139484 - 28139611
Alignment:
Q  104 aatctctacgatgctctacgtcaaagtggagtccacactttcatggatgacgaagagcttcaacgagggggygaaataacaccatcgcttgtgaaagcca 203  Q
    ||||||||| | ||||| ||| |  ||||| |||||||||| || |||||    ||||||||| |||| |  |||||| |||| || || || |||||||    
T  28139484 aatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagcca 28139583  T
Q  204 ttgaagaatccagaattttcatccctgt 231  Q
    |||||||||| || ||||||||||||||    
T  28139584 ttgaagaatctaggattttcatccctgt 28139611  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 26861511 - 26861567
Alignment:
Q  56 gtattcctaagtttcagaggagttgacactcgccatggttttaccggcaatctctac 112  Q
    |||||||| ||||||||||||  |||||||||  ||||||||||||| |||||||||    
T  26861511 gtattcctcagtttcagaggaagtgacactcggtatggttttaccggtaatctctac 26861567  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 28325463 - 28325554
Alignment:
Q  143 ttcatggatgacgaagagcttcaacgagggggygaaataacaccatcgcttgtgaaagccattgaagaatccagaattttcatccctgtttt 234  Q
    ||||| |||||| |||| ||||||||||| |  ||||||||||| || ||| | || ||||||||||| || || |||||||| ||| ||||    
T  28325463 ttcattgatgacaaagaccttcaacgaggtgacgaaataacaccgtcacttttcaaggccattgaagagtctaggattttcattcctatttt 28325554  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 28781057 - 28781090
Alignment:
Q  79 tgacactcgccatggttttaccggcaatctctac 112  Q
    |||||||||||| |||||||||||||||||||||    
T  28781057 tgacactcgccacggttttaccggcaatctctac 28781090  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 27593312 - 27593256
Alignment:
Q  56 gtattcctaagtttcagaggagttgacactcgccatggttttaccggcaatctctac 112  Q
    |||||||| ||||||||||||  |||||||||  | ||||| |||||||||||||||    
T  27593312 gtattcctcagtttcagaggaagtgacactcggtacggtttcaccggcaatctctac 27593256  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 27706694 - 27706638
Alignment:
Q  56 gtattcctaagtttcagaggagttgacactcgccatggttttaccggcaatctctac 112  Q
    |||||||| ||||||||||||| |||||||||  | ||||| || ||||||||||||    
T  27706694 gtattcctcagtttcagaggaggtgacactcggtacggtttcacaggcaatctctac 27706638  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 29826009 - 29826079
Alignment:
Q  143 ttcatggatgacgaagagcttcaacgagggggygaaataacaccatcgcttgtgaaagccattgaagaatc 213  Q
    ||||| |||||| ||||||||||| ||||||  ||||| ||||| || |||||||| || ||| |||||||    
T  29826009 ttcattgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcaattcaagaatc 29826079  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 31284183 - 31284239
Alignment:
Q  56 gtattcctaagtttcagaggagttgacactcgccatggttttaccggcaatctctac 112  Q
    |||||||| |||||||| |||  |||||||||  ||||||| |||||||||||||||    
T  31284183 gtattccttagtttcaggggaagtgacactcggtatggtttcaccggcaatctctac 31284239  T

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Target: scaffold0781 (Bit Score: 149; Significance: 3e-79; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 149; E-Value: 3e-79
Query Start/End: Original strand, 6 - 198
Target Start/End: Complemental strand, 193 - 1
Alignment:
Q  6 cacaatcatcttcctyctcttcttcatcctcctccaaattcacctataacgtattcctaagtttcagaggagttgacactcgccatggttttaccggcaa 105  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  193 cacaatcatcttcctcctcttcttcatcctcctccaaattcacctataacgtgttcctaagtttcagaggagctgacactcgccatggttttaccggcaa 94  T
Q  106 tctctacgatgctctacgtcaaagtggagtccacactttcatggatgacgaagagcttcaacgagggggygaaataacaccatcgcttgtgaa 198  Q
    ||| |||||||||||| || ||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| |||| ||| ||||    
T  93 tctttacgatgctctatgtaaaagtggagtccacactttcaaggatgacgaggagcttcaacgagggggtgaaataacagcatcacttatgaa 1  T

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Target: scaffold0038 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 231
Target Start/End: Original strand, 34607 - 34795
Alignment:
Q  43 attcacctataacgtattcctaagtttcagaggagttgacactcgccatggttttaccggcaatctctacgatgctctacgtcaaagtggagtccacact 142  Q
    |||||||||| |||| ||||| ||||| |||||   |||||||||| ||||||||||||  ||||||||    |||||  |||| |  ||| |||||||     
T  34607 attcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagggaatccacacc 34706  T
Q  143 ttcatggatgacgaagagcttcaacgagggggygaaataacaccatcgcttgtgaaagccattgaagaatccagaattttcatccctgt 231  Q
    ||||| ||||||   ||||||||| |||| |  |||||||||||||| ||| | || ||||||||||| || || |||||||| |||||    
T  34707 ttcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgt 34795  T

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Target: scaffold0038; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 116778 - 116869
Alignment:
Q  143 ttcatggatgacgaagagcttcaacgagggggygaaataacaccatcgcttgtgaaagccattgaagaatccagaattttcatccctgtttt 234  Q
    ||||| |||||| |||| ||||||||||| |  ||||||||||| || ||| | || ||||||||||| || || |||||||| ||| ||||    
T  116778 ttcattgatgacaaagaccttcaacgaggtgacgaaataacaccgtcacttttcaaggccattgaagagtctaggattttcattcctatttt 116869  T

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Target: scaffold0019 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 225
Target Start/End: Complemental strand, 58587 - 58405
Alignment:
Q  43 attcacctataacgtattcctaagtttcagaggagttgacactcgccatggttttaccggcaatctctacgatgctctacgtcaaagtggagtccacact 142  Q
    |||||||||| |||| ||||| || || |||||   |||||||||| |||||||||| || |||||||||   |||||  || | |  ||| |||  ||     
T  58587 attcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactggaaatctctacagagctctttgtgacaagggaatccgaacc 58488  T
Q  143 ttcatggatgacgaagagcttcaacgagggggygaaataacaccatcgcttgtgaaagccattgaagaatccagaattttcat 225  Q
    ||||||||||||  |||||||||| |||| |  |||||||||||||| ||| | || |||||| |||| || || ||||||||    
T  58487 ttcatggatgacagagagcttcaaggaggtgacgaaataacaccatcacttttcaaggccattaaagagtctaggattttcat 58405  T

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Target: scaffold1254 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 186 - 153
Alignment:
Q  79 tgacactcgccatggttttaccggcaatctctac 112  Q
    |||||||||||| |||||||||||||||||||||    
T  186 tgacactcgccacggttttaccggcaatctctac 153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 7443 - 7476
Alignment:
Q  79 tgacactcgccatggttttaccggcaatctctac 112  Q
    |||||||||||| |||||||||||||||||||||    
T  7443 tgacactcgccacggttttaccggcaatctctac 7476  T

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Target: scaffold0277 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 13901 - 13868
Alignment:
Q  79 tgacactcgccatggttttaccggcaatctctac 112  Q
    |||||||||||| |||||||||||||||||||||    
T  13901 tgacactcgccacggttttaccggcaatctctac 13868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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