View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5797-20 (Length: 104)
Name: Solexa-NF5797-20
Description: NF5797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5797-20 |
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| [»] scaffold0256 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: scaffold0256 (Bit Score: 79; Significance: 2e-37; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 11146 - 11056
Alignment:
| Q |
14 |
tatggaaatttgtgaaaaaccacgactccacgctcgaaatgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacctc |
104 |
Q |
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| T |
11146 |
tatggaaatttgtaaaaaaccacgactccgtgctcgaaatgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacctc |
11056 |
T |
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Target: chr7 (Bit Score: 44; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 48298735 - 48298648
Alignment:
| Q |
16 |
tggaaatttgtgaaaaaccacgactccacgctcgaaatgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacct |
103 |
Q |
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| T |
48298735 |
tggaaatttgtgaaaaatcgtgacaccgtgctagaaatgctgaaggacaaaatcaaggaggaggcgcttaggacatacctatttacct |
48298648 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 233619 - 233534
Alignment:
| Q |
16 |
tggaaatttgtgaaaaaccacgactccacgctcgaaatgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttac |
101 |
Q |
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| T |
233619 |
tggaaatttgtgaaaaatcgtgacaccgtgctagaaatgctgaaggacaaaatcaaggaggaggcgcttaggacatacctatttac |
233534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 21629331 - 21629418
Alignment:
| Q |
13 |
gtatggaaatttgtgaaaaaccacgactccacgctcgaaatgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacct |
103 |
Q |
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| T |
21629331 |
gtatggaaatttgtgaaacactgagactccgtgctagaaa---tgaaggacaaaatcaaggaggaggcacttaggacatacctaattacct |
21629418 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 7391871 - 7391963
Alignment:
| Q |
11 |
acgtatggaaatttgtgaaaaaccacgactccacgctcgaaatgctgaaggacaaaatcaaagaggtggcacttaggacatacttatttacct |
103 |
Q |
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| T |
7391871 |
acgtctggaaatttgtgaaaaatcgagacgccgtgctagaaatgcttaaggacaaaatcaaggaagaggcacttaggacatacctatttacct |
7391963 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 16977444 - 16977350
Alignment:
| Q |
11 |
acgtatggaaatttgtgaaaaaccacgactccacgctcgaaatgctgaagg-acaaaatcaaagaggtggcacttaggacatacttatttacctc |
104 |
Q |
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| T |
16977444 |
acgtatggaaatttgtgaaaaaacgagactccctgttagagatgctgaagggaaaaaatcaaggaggagacacttaggacatacctatttacctc |
16977350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 16874434 - 16874504
Alignment:
| Q |
13 |
gtatggaaatttgtgaaaaaccacgactccacgctcgaaatgctgaaggacaaaatcaaagaggtggcact |
83 |
Q |
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| T |
16874434 |
gtatggaaatttgtgaaaaatcaagacgccgtgctggaaatgttgaaggacaaaaccaaggaggaggcact |
16874504 |
T |
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