View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5797-3 (Length: 224)
Name: Solexa-NF5797-3
Description: NF5797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5797-3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 6626823 - 6626600
Alignment:
| Q |
1 |
atagtccttttgattaatgaggattttcttgcagcatgttctgacctctaaattccatgtacagtgtttttgcaagcaaagagacaagaaggaatgcaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6626823 |
atagtccttttgattaatgaggattttcttgcagcatgttctgacctctaaattccatgtacagtgtttttgcaagcaaagagacgagaaggaatgcaga |
6626724 |
T |
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| Q |
101 |
gaatgcggagacaaggccacctgggagtaggagtgtgcgtcaagatacaagtggggatgcagctccaggctttcgaggaaataacttccggataagtgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6626723 |
gaatgcggagacaaggccacctgggagtaggagtgtgcgtcaagatacaagtggggatgcagctccaggctttcgagggaataacttccggataagtgtc |
6626624 |
T |
|
| Q |
201 |
cctccaaggagtactagtacttca |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
6626623 |
cctccaaggagtactagtacttca |
6626600 |
T |
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