View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5797-4 (Length: 222)
Name: Solexa-NF5797-4
Description: NF5797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5797-4 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 13348474 - 13348685
Alignment:
| Q |
7 |
aaaaaatatcttgaagaatgaatgaaatattacaaacctgcagcaggggtaatgcaaaccaaaccagtactcatgccttgaacagcaccaataacagaag |
106 |
Q |
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| T |
13348474 |
aaaaaatatcttgaagaatgaatgaaatattacaaacctgcagcaggggtaatgcaaaccaaaccagtaatcatgccttgaacagcaccaataacagaag |
13348573 |
T |
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| Q |
107 |
gctttctgaagaaaatgacatcaaggaagacccaagtaagcaagctagtagcagtgcaagcatgtgtgttcaagacagccaatgaakcatccaagccaac |
206 |
Q |
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| T |
13348574 |
gctttctgaagaaaatgacatcaaggaagacccaagtaagcaagctagtagcagtgcaagcatgtgtgttcaagacagccaatgaagcatccaagccaac |
13348673 |
T |
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| Q |
207 |
tgagtaaggatc |
218 |
Q |
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| T |
13348674 |
tgagtaaggatc |
13348685 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 39725518 - 39725594
Alignment:
| Q |
55 |
gtaatgcaaaccaaaccagtactcatgccttgaacagcaccaataacagaaggctttctgaagaaaatgacatcaag |
131 |
Q |
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| T |
39725518 |
gtaatgcaaacaagaccagtaatcatgccttgaacagctccaataactgatggttttttgaagaatatgacatcaag |
39725594 |
T |
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