View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5797-5 (Length: 217)
Name: Solexa-NF5797-5
Description: NF5797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5797-5 |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 8e-54; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 8 - 214
Target Start/End: Original strand, 50568357 - 50568563
Alignment:
| Q |
8 |
aaacaaggacgtcaagtggtgattatagtagttagatagcgtagcagaatttgaacaaatcacctttaatccacaatacaatttttagaacaaatcactt |
107 |
Q |
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| T |
50568357 |
aaacaaggacgtcaagtggtgattgtagtagttagatagcgtagcagaatttgaacaaatcacttttaatctgcaatacattttttagaacaaatcactt |
50568456 |
T |
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| Q |
108 |
ttgatcttcaatgcatcactttgtacaaaatgcagttgaatagaggctatatcgacactatagccatgtaacatagcggaatttaaacccaccactattt |
207 |
Q |
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| T |
50568457 |
ttgatcagtaatacactttttagtacagaatgtacttgaatagaggctataccgacactgtagcgatttaacatagtggaatttgaacccaccgctgttt |
50568556 |
T |
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| Q |
208 |
tatgtta |
214 |
Q |
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||||||| |
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| T |
50568557 |
tatgtta |
50568563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 95 - 217
Target Start/End: Original strand, 50568828 - 50568951
Alignment:
| Q |
95 |
gaacaaatcacttttgatcttcaatgcatcactttgtacaaaatgcagttgaa-tagaggctatatcgacactatagccatgtaacatagcggaatttaa |
193 |
Q |
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| T |
50568828 |
gaacaaatcacttatgatcttcaatgcatcacttagtacaaaatgcagttgaaatagaggctatatcgacactatagcaatgtaacatagcggaatttaa |
50568927 |
T |
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| Q |
194 |
acccaccactattttatgttatct |
217 |
Q |
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| T |
50568928 |
acccaccactattttatgttatct |
50568951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 50568563 - 50568668
Alignment:
| Q |
8 |
aaacaaggacgtcaagtggtgattatagtagttagatagcgtagcagaatttgaacaaatcacctttaatccacaatacaatttttagaacaaatcactt |
107 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
50568563 |
aaacaaggacgtcaagtggcggttatagtagttagatagcgtagcagaatttgaacaaatcacctttaatccacaatacactttttagaacaaatcactt |
50568662 |
T |
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| Q |
108 |
ttgatc |
113 |
Q |
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|||||| |
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| T |
50568663 |
ttgatc |
50568668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 34 - 214
Target Start/End: Original strand, 50568177 - 50568357
Alignment:
| Q |
34 |
agtagttagatagcgtagcagaatttgaacaaatcacctttaatccacaatacaatttttagaacaaatcacttttgatcttcaatgcatcactttgtac |
133 |
Q |
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| T |
50568177 |
agtagttagatagcatagcagaatttgaacaaatcacttttaatccgcaatacactttttagaacttatcacttttgattggtaatacactttttagtac |
50568276 |
T |
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| Q |
134 |
aaaatgcagttgaatagaggctatatcgacactatagccatgtaacatagcggaatttaaacccaccactattttatgtta |
214 |
Q |
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| T |
50568277 |
aaaatgtccttgaatagaggctataccgacactatagcaatttaacatagtggaatttgaacccaccgctgttttatgtta |
50568357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 50568776 - 50568838
Alignment:
| Q |
8 |
aaacaaggacgtcaagtggtgattatagtagttagatagcgtagcagaatttgaacaaatcac |
70 |
Q |
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||||||||||||||||| | | |||||||||||||||||||||||| |||||||||||||||| |
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| T |
50568776 |
aaacaaggacgtcaagtagcggttatagtagttagatagcgtagcaaaatttgaacaaatcac |
50568838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 50568707 - 50568776
Alignment:
| Q |
145 |
gaatagaggctatatcgacactatagccatgtaacatagcggaatttaaacccaccactattttatgtta |
214 |
Q |
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| T |
50568707 |
gaatagaggctatacggacactatagcaatttaacaaagtggaatttgaacccaccgcagttttatgtta |
50568776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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