View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5797-7 (Length: 170)
Name: Solexa-NF5797-7
Description: NF5797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5797-7 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 3e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 31218888 - 31219040
Alignment:
| Q |
8 |
agcgcttccttgtaatgtaatcaatagctttctcagtgtgactagactctccactttttcctttgatatgatctgtatggaaattttgcaaactctcatt |
107 |
Q |
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| T |
31218888 |
agcgcttccttgtaatgtaatcaatagctttctcagtgtgattggactctccactttttcctttgatatgatctgtatggaaattttgcaaactctcatt |
31218987 |
T |
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| Q |
108 |
ttctatttcctcttaggtttttcctaggaactccttggcctcctcaacctttg |
160 |
Q |
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| T |
31218988 |
ttctatttcctctgaggtttttcctaggaactccttggcctcctcaacctttg |
31219040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 8e-72
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 31213133 - 31213285
Alignment:
| Q |
8 |
agcgcttccttgtaatgtaatcaatagctttctcagtgtgactagactctccactttttcctttgatatgatctgtatggaaattttgcaaactctcatt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31213133 |
agcgcttccttgtaatgtaatcaatagctttctcagtgtgaatggaatctccactttttcctttgatatgatctgtatggaaattttgcaaactctcatt |
31213232 |
T |
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| Q |
108 |
ttctatttcctcttaggtttttcctaggaactccttggcctcctcaacctttg |
160 |
Q |
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| T |
31213233 |
ttctatttcctctgaggtttttcctaggaactccttggcctcctcaacctttg |
31213285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 8e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 8e-72
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 47896341 - 47896189
Alignment:
| Q |
8 |
agcgcttccttgtaatgtaatcaatagctttctcagtgtgactagactctccactttttcctttgatatgatctgtatggaaattttgcaaactctcatt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47896341 |
agcgcttccttgtaatgtaatcaatagctttctcagtgtgattggattctccactttttcctttgatatgatctgtatggaaattttgcaaactctcatt |
47896242 |
T |
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| Q |
108 |
ttctatttcctcttaggtttttcctaggaactccttggcctcctcaacctttg |
160 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47896241 |
ttctatttcctctgaggtttttcctaggaactccttggcctcctcaacctttg |
47896189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 4958330 - 4958377
Alignment:
| Q |
10 |
cgcttccttgtaatgtaatcaatagctttctcagtgtgactagactct |
57 |
Q |
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|||||||||||| ||| | || ||||||||||||||||||| |||||| |
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| T |
4958330 |
cgcttccttgtactgttaccagtagctttctcagtgtgactggactct |
4958377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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