View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5797-8 (Length: 156)
Name: Solexa-NF5797-8
Description: NF5797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5797-8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 5e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 5e-79
Query Start/End: Original strand, 4 - 156
Target Start/End: Original strand, 6186262 - 6186414
Alignment:
| Q |
4 |
agattgttgtgtacttagatttctacatcgaattatgttatggattacgcatcactgtattgtttgtcccttgtaggcctattacatagcttgttacact |
103 |
Q |
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| T |
6186262 |
agattgttgtgtacttagatttctacatcgaattatgttatggtttacgcatcactgtattgtttgtcccttgtaggcctattacatagcttgttacact |
6186361 |
T |
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| Q |
104 |
ccccaatttcttccatatgtgaccattcttattgcatatatgtatgatctgtg |
156 |
Q |
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| T |
6186362 |
ccccaatttcttccatatgtgaccattcttattgcatatatgtatgatctgtg |
6186414 |
T |
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