View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5798-1 (Length: 244)
Name: Solexa-NF5798-1
Description: NF5798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5798-1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 11781490 - 11781733
Alignment:
| Q |
1 |
agagacacacagtgaggcaaccgtagcatgaggaagccgtgagtgagccaacaacttagaaaccggggttgccaattctgcctgccaatcaaacatggca |
100 |
Q |
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| T |
11781490 |
agagacacacagcgaggcaaccatagcatgaggaagccgtgagtgagccaacaacttagaaaccggggttgccaattctgcctgccaatcaaacatggca |
11781589 |
T |
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| Q |
101 |
agaccggctgcgaaagaatcaaattaagaagtaaaccgagcaagcacggagaaacgatcgcgatgccatagttatgtttcacgatgcaaattgaataagc |
200 |
Q |
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| T |
11781590 |
agaatggctgcgaaggaatcaaattaagaagcaaaccgagcaagcacggagaaacgatcgcgatgccacagttatgtttcacgatgcaaattgaataagc |
11781689 |
T |
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| Q |
201 |
accaaacaagaaatgaacaagcttatccaaatttgaaatcaatg |
244 |
Q |
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| T |
11781690 |
accaaacaagaaatgaacaagcttatccaaatttgaaatcaatg |
11781733 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 26181698 - 26181666
Alignment:
| Q |
70 |
tgccaattctgcctgccaatcaaacatggcaag |
102 |
Q |
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| T |
26181698 |
tgccaattctgcctgccaatcaaacatggcaag |
26181666 |
T |
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