View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5798-11 (Length: 132)
Name: Solexa-NF5798-11
Description: NF5798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5798-11 |
 | |
|
| [»] chr5 (8 HSPs) |
| |
|
| [»] chr3 (5 HSPs) |
| |
|
| [»] chr7 (9 HSPs) |
| |
|
| [»] scaffold0440 (1 HSPs) |
| |
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| [»] chr6 (12 HSPs) |
| |
|
| [»] chr2 (6 HSPs) |
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|
| [»] scaffold0063 (1 HSPs) |
| |
|
| [»] scaffold0500 (1 HSPs) |
| | |
|
| [»] scaffold0352 (1 HSPs) |
| | |
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| [»] scaffold0665 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 3e-64; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 3e-64
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 33574533 - 33574664
Alignment:
| Q |
1 |
gacttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctat |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33574533 |
gacttggagatctggtgggaaaccatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctat |
33574632 |
T |
|
| Q |
101 |
gagtaactaattcttttgtggttacttcctga |
132 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
33574633 |
gagtaactaattcttttgtggttaattcctga |
33574664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 15543183 - 15543060
Alignment:
| Q |
1 |
gacttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctat |
100 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15543183 |
gacttggagatctggtggggaaccatcaaaactaagagtcaatcttccttcacatgtatgaatccgttttcttatgttagttagcttatactttagctat |
15543084 |
T |
|
| Q |
101 |
gagtaactaattcttttgtggtta |
124 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
15543083 |
gagtaactaattcttttgtggtta |
15543060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 26713142 - 26713014
Alignment:
| Q |
1 |
gacttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctat |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26713142 |
gacttggagatctggtgggaaaccatcaaaactaagagtcaatcatcctttacatgtatgaatcctttttcttatgttagttagcttatactttagctat |
26713043 |
T |
|
| Q |
101 |
gagtaactaattcttttgtggttacttcctga |
132 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| |
|
|
| T |
26713042 |
gagtaactaa---ttttgtggttaattcctga |
26713014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 26982880 - 26982752
Alignment:
| Q |
1 |
gacttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctat |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26982880 |
gacttggagatctggtgggaaaccatcaaaactaagagtcaatcatcctttacatgtatgaatcctttttcttatgttagttagcttatactttagctat |
26982781 |
T |
|
| Q |
101 |
gagtaactaattcttttgtggttacttcctga |
132 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| |
|
|
| T |
26982780 |
gagtaactaa---ttttgtggttaattcctga |
26982752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 15533001 - 15532878
Alignment:
| Q |
1 |
gacttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctat |
100 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15533001 |
gacttggagatctggtggggaaccatcaaaactaagagtcaatcttccttcacatggatgaatccgttttcttatgttagttagcttatactttagctat |
15532902 |
T |
|
| Q |
101 |
gagtaactaattcttttgtggtta |
124 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
15532901 |
gagtaactaattcttttgtggtta |
15532878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 14617221 - 14617118
Alignment:
| Q |
8 |
agatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaac |
107 |
Q |
| |
|
|||| |||||||| || |||| |||| | ||||||| |||| |||||||||||||||| || |||||| ||||| ||| |||||||| |||||||||| |
|
|
| T |
14617221 |
agatttggtgggagaccatcacaactcatagtcaattatccaatacatgtatgaatccttgtttttatgtgagttatcttgtactttagttatgagtaac |
14617122 |
T |
|
| Q |
108 |
taat |
111 |
Q |
| |
|
|||| |
|
|
| T |
14617121 |
taat |
14617118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 22159196 - 22159299
Alignment:
| Q |
8 |
agatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaac |
107 |
Q |
| |
|
|||| |||||||| | |||| |||| | |||||||||||| |||||||||||||||| || |||||| ||||| ||| |||||||| |||||||||| |
|
|
| T |
22159196 |
agatttggtgggagagcatcacaactcatagtcaatcatccaatacatgtatgaatccttgtttttatgtgagttatcttgtactttagttatgagtaac |
22159295 |
T |
|
| Q |
108 |
taat |
111 |
Q |
| |
|
|||| |
|
|
| T |
22159296 |
taat |
22159299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 34405301 - 34405404
Alignment:
| Q |
8 |
agatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaac |
107 |
Q |
| |
|
|||| |||||||| || |||| |||| | ||||||| |||| |||| ||||||||||| | |||||| ||||| ||| |||| ||| |||||||||| |
|
|
| T |
34405301 |
agatttggtgggagaccatcacaactcatagtcaattatccaatacatatatgaatccttgattttatgtgagttatcttgtactgtagttatgagtaac |
34405400 |
T |
|
| Q |
108 |
taat |
111 |
Q |
| |
|
|||| |
|
|
| T |
34405401 |
taat |
34405404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 3e-64; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 3e-64
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 22627113 - 22626982
Alignment:
| Q |
1 |
gacttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctat |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22627113 |
gacttggagatctggtgggaaaccatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctat |
22627014 |
T |
|
| Q |
101 |
gagtaactaattcttttgtggttacttcctga |
132 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
22627013 |
gagtaactaattcttttgtggttaattcctga |
22626982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 7e-53
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 11139370 - 11139246
Alignment:
| Q |
1 |
gacttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcct-ttttcttatgttagttagcttatactttagcta |
99 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
11139370 |
gacttggagatctggtgggaaaccatcaaaactaagagtcaatcatccttcacatgtatgaatccttttttcttatgttagttatcttatactttagctt |
11139271 |
T |
|
| Q |
100 |
tgagtaactaattcttttgtggtta |
124 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
11139270 |
tgagtaactaattcttttgtggtta |
11139246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 5e-51
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 39564306 - 39564178
Alignment:
| Q |
1 |
gacttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctat |
100 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39564306 |
gacttggagatatggtgggaaaccatcaaaactaagagtcaatcatcctttacatgtatgaatcctttttcttatgttagttagcttatactttagctat |
39564207 |
T |
|
| Q |
101 |
gagtaactaattcttttgtggttacttcctga |
132 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| |
|
|
| T |
39564206 |
gagtaactaa---ttttgtggttaattcctga |
39564178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 1097009 - 1096893
Alignment:
| Q |
8 |
agatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaac |
107 |
Q |
| |
|
|||||||||||| ||| |||| |||| | |||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1097009 |
agatctggtgggcaaccatcacaactcatagtcaatcatccattacatgtatgaatcctttttcttatgttagttaacttatactttagctatgagtaac |
1096910 |
T |
|
| Q |
108 |
taattcttttgtggtta |
124 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
1096909 |
taattcctttgtggtta |
1096893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 31878463 - 31878360
Alignment:
| Q |
8 |
agatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaac |
107 |
Q |
| |
|
|||||||||||| ||| ||||||||| | |||||||||||| |||||||||||||||| || |||||||||||| || ||||||||||||||||||| |
|
|
| T |
31878463 |
agatctggtgggcaaccatcaaaactcatagtcaatcatccaatacatgtatgaatccttgtttttatgttagttattttgtactttagctatgagtaac |
31878364 |
T |
|
| Q |
108 |
taat |
111 |
Q |
| |
|
|||| |
|
|
| T |
31878363 |
taat |
31878360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 8e-62; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 23760409 - 23760278
Alignment:
| Q |
1 |
gacttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctat |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23760409 |
gacttggagatctggtgggaaaccatcaaaactaagagtcaatcatccttcacttgtatgaatcctttttcttatgttagttagcttatactttagctat |
23760310 |
T |
|
| Q |
101 |
gagtaactaattcttttgtggttacttcctga |
132 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
23760309 |
gagtaactaattcttttgtggttaattcctga |
23760278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 11278937 - 11279060
Alignment:
| Q |
1 |
gacttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctat |
100 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
11278937 |
gacttggagatctggtgggcaaccatcaaaactaagagtcaatcatcctttacatgtatgaatcatttttcttatgttagttagcttatactttacctat |
11279036 |
T |
|
| Q |
101 |
gagtaactaattcttttgtggtta |
124 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
11279037 |
gagtaactaattcttttgtggtta |
11279060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 6e-41
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 294313 - 294433
Alignment:
| Q |
4 |
ttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgag |
103 |
Q |
| |
|
|||||||||||||| | ||| ||||||||||| |||||||||||| | ||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
294313 |
ttggagatctggtgagcaaccatcaaaactaatagtcaatcatccattacatgtatgaatctttcttcttatgttagttagcttatactttagctatgag |
294412 |
T |
|
| Q |
104 |
taactaattcttttgtggtta |
124 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
294413 |
taactaattctcttgtggtta |
294433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 33312448 - 33312570
Alignment:
| Q |
1 |
gacttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctat |
100 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33312448 |
gacttggagatatggtgggaaaccatcgaaactaagagtcaatcatccttcacatgtatgaatcctttttc---------ttagcttatactttagctat |
33312538 |
T |
|
| Q |
101 |
gagtaactaattcttttgtggttacttcctga |
132 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
33312539 |
gagtaactaattcttttgtggttaattcctga |
33312570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 24782858 - 24782974
Alignment:
| Q |
8 |
agatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaac |
107 |
Q |
| |
|
|||| |||||||| || |||| |||| | ||||||| |||| |||||||||||||||| || |||||| ||||| ||| |||||||| |||||||||| |
|
|
| T |
24782858 |
agatttggtgggagaccatcacaactcatagtcaattatccaatacatgtatgaatccttgtttttatgtgagttatcttgtactttagttatgagtaac |
24782957 |
T |
|
| Q |
108 |
taattcttttgtggtta |
124 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
24782958 |
taatctttttgtggtta |
24782974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 35773324 - 35773221
Alignment:
| Q |
8 |
agatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaac |
107 |
Q |
| |
|
|||| |||||||| || |||| |||| | |||||||||||| |||||||||||||||| || |||||| ||||| ||| ||| |||| |||||||||| |
|
|
| T |
35773324 |
agatttggtgggagaccatcacaactcatagtcaatcatccaatacatgtatgaatccttgtttttatgtgagttatcttgtacgttagatatgagtaac |
35773225 |
T |
|
| Q |
108 |
taat |
111 |
Q |
| |
|
|||| |
|
|
| T |
35773224 |
taat |
35773221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 6966600 - 6966703
Alignment:
| Q |
8 |
agatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaac |
107 |
Q |
| |
|
|||| |||||||| || |||| |||| | ||||||| |||| |||||||||||||||| | |||||| ||||| ||| |||| ||| |||||||||| |
|
|
| T |
6966600 |
agatttggtgggagaccatcacaactcatagtcaattatccaatacatgtatgaatccttgattttatgtgagttatcttgtactgtagttatgagtaac |
6966699 |
T |
|
| Q |
108 |
taat |
111 |
Q |
| |
|
|||| |
|
|
| T |
6966700 |
taat |
6966703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 17863887 - 17863784
Alignment:
| Q |
8 |
agatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaac |
107 |
Q |
| |
|
|||| |||||||| || |||| |||| | ||||||| |||| |||||||||||||||| | |||||| ||||| ||| |||| ||| |||||||||| |
|
|
| T |
17863887 |
agatttggtgggagaccatcacaactcatagtcaattatccaatacatgtatgaatccttgattttatgtgagttatcttgtactgtagttatgagtaac |
17863788 |
T |
|
| Q |
108 |
taat |
111 |
Q |
| |
|
|||| |
|
|
| T |
17863787 |
taat |
17863784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 17867139 - 17867043
Alignment:
| Q |
15 |
gtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaactaat |
111 |
Q |
| |
|
|||||| || |||| |||| | ||||||| |||| |||||||||||||||| | |||||| ||||| ||| |||| ||| |||||||||||||| |
|
|
| T |
17867139 |
gtgggagaccatcacaactcatagtcaattatccaatacatgtatgaatccttgattttatgtgagttatcttgtactgtagttatgagtaactaat |
17867043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0440 (Bit Score: 116; Significance: 2e-59; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 9454 - 9585
Alignment:
| Q |
1 |
gacttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctat |
100 |
Q |
| |
|
||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9454 |
gacttagagatctagtgggaaaccatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctat |
9553 |
T |
|
| Q |
101 |
gagtaactaattcttttgtggttacttcctga |
132 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
9554 |
gagtaactaattcttttgtggttaattcctga |
9585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 5e-57; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 13017990 - 13017859
Alignment:
| Q |
1 |
gacttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctat |
100 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
13017990 |
gacttggagatctggttggaaaccatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttgtgttagttagcttatacgttagctat |
13017891 |
T |
|
| Q |
101 |
gagtaactaattcttttgtggttacttcctga |
132 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
13017890 |
gagtaactaattcttttgtggttaattcctga |
13017859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 22247004 - 22247135
Alignment:
| Q |
1 |
gacttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctat |
100 |
Q |
| |
|
||||| |||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22247004 |
gacttagagatccggtgggaaaccatcaaaactaagagtcaatcattcttcacatgtatgaatcctttttcttatgttagttagcttatactttcgctat |
22247103 |
T |
|
| Q |
101 |
gagtaactaattcttttgtggttacttcctga |
132 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
22247104 |
gagtaactaattcttttgtggttaattcctga |
22247135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 22221175 - 22221300
Alignment:
| Q |
7 |
gagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaa |
106 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
22221175 |
gagatccggtgggaaaccatcaaaactaagagtcaatcattcttcacatgtatgaatcctttttcttatgttagttagcttatactttcgctatgagtaa |
22221274 |
T |
|
| Q |
107 |
ctaattcttttgtggttacttcctga |
132 |
Q |
| |
|
|||||||||||||||||| ||||||| |
|
|
| T |
22221275 |
ctaattcttttgtggttaattcctga |
22221300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 32426817 - 32426937
Alignment:
| Q |
4 |
ttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgag |
103 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| | |||||||||||| |||||||||||||||| || ||| |||||||| ||| ||||||||||| ||| |
|
|
| T |
32426817 |
ttggagatctggtgggcaaccatcaaaactcatagtcaatcatccaatacatgtatgaatccttgtttttacgttagttatcttgtactttagctaggag |
32426916 |
T |
|
| Q |
104 |
taactaattcttttgtggtta |
124 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32426917 |
taactaattcttttgtggtta |
32426937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 32426634 - 32426748
Alignment:
| Q |
4 |
ttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgag |
103 |
Q |
| |
|
|||||||||||||| | ||| ||||||||| | |||||||||||| ||| |||||||||||| || ||| |||||||| ||| ||||||||||| ||| |
|
|
| T |
32426634 |
ttggagatctggtgagcaaccatcaaaactcatagtcaatcatccaatacacgtatgaatccttgtttttacgttagttatcttgtactttagctaggag |
32426733 |
T |
|
| Q |
104 |
taactaattcttttg |
118 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
32426734 |
taactaattcttttg |
32426748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 1837926 - 1838029
Alignment:
| Q |
8 |
agatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaac |
107 |
Q |
| |
|
|||| |||||||| || |||| |||| | |||||||||||| ||||||||||| |||| || |||||| ||||| ||| |||||||| |||||||||| |
|
|
| T |
1837926 |
agatttggtgggagaccatcacaactcatagtcaatcatccaatacatgtatgaaaccttatttttatgtgagttatcttgtactttagatatgagtaac |
1838025 |
T |
|
| Q |
108 |
taat |
111 |
Q |
| |
|
|||| |
|
|
| T |
1838026 |
taat |
1838029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 15534541 - 15534644
Alignment:
| Q |
8 |
agatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaac |
107 |
Q |
| |
|
|||| |||||||| || |||| |||| | |||||||||||| |||| ||||||||||| || |||||| ||||| ||| |||||||| |||||||||| |
|
|
| T |
15534541 |
agatttggtgggagaccatcacaactcatagtcaatcatccaatacatatatgaatccttgtttttatgtgagttatcttgtactttagatatgagtaac |
15534640 |
T |
|
| Q |
108 |
taat |
111 |
Q |
| |
|
|||| |
|
|
| T |
15534641 |
taat |
15534644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 19665457 - 19665354
Alignment:
| Q |
8 |
agatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaac |
107 |
Q |
| |
|
|||| |||||||| || |||| |||| | |||||||||||| |||||||||||||||| || |||||| ||||| ||| ||||||| |||||||||| |
|
|
| T |
19665457 |
agatttggtgggagaccatcacaactcatagtcaatcatccaatacatgtatgaatccttgtttttatgtgagttatcttgtactttatatatgagtaac |
19665358 |
T |
|
| Q |
108 |
taat |
111 |
Q |
| |
|
|||| |
|
|
| T |
19665357 |
taat |
19665354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 14790071 - 14790174
Alignment:
| Q |
8 |
agatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaac |
107 |
Q |
| |
|
|||| |||||||| || |||| |||| | ||||||| |||| |||||||||||||||| | |||||| ||||| ||| |||| ||| |||||||||| |
|
|
| T |
14790071 |
agatttggtgggagaccatcacaactcatagtcaattatccaatacatgtatgaatccttgattttatgtgagttatcttgtactgtagttatgagtaac |
14790170 |
T |
|
| Q |
108 |
taat |
111 |
Q |
| |
|
|||| |
|
|
| T |
14790171 |
taat |
14790174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 15537736 - 15537839
Alignment:
| Q |
8 |
agatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaac |
107 |
Q |
| |
|
|||| |||||||| || |||| |||| | ||||||||||| |||||||||| ||||| || |||||| ||||| ||| ||| |||| |||||||||| |
|
|
| T |
15537736 |
agatttggtgggagaccatcacaactcatagtcaatcatctaatacatgtatgactccttgtttttatgtgagttatcttgtacattagatatgagtaac |
15537835 |
T |
|
| Q |
108 |
taat |
111 |
Q |
| |
|
|||| |
|
|
| T |
15537836 |
taat |
15537839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 32705046 - 32704943
Alignment:
| Q |
8 |
agatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaac |
107 |
Q |
| |
|
|||| |||||||| || |||| |||| | ||||||| |||| |||||||||||||||| | |||||| ||||| ||| |||| ||| |||||||||| |
|
|
| T |
32705046 |
agatttggtgggagaccatcacaactcatagtcaattatccaatacatgtatgaatccttgattttatgtgagttatcttgtactgtagttatgagtaac |
32704947 |
T |
|
| Q |
108 |
taat |
111 |
Q |
| |
|
|||| |
|
|
| T |
32704946 |
taat |
32704943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 14795106 - 14795202
Alignment:
| Q |
15 |
gtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaactaat |
111 |
Q |
| |
|
|||||| || |||| |||| | ||||||| |||| |||||||||||||||| | |||||| ||||| ||| |||| ||| |||||||||||||| |
|
|
| T |
14795106 |
gtgggagaccatcacaactcatagtcaattatccaatacatgtatgaatccttgattttatgtgagttatcttgtactgtagttatgagtaactaat |
14795202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 5e-57; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 31527834 - 31527965
Alignment:
| Q |
1 |
gacttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctat |
100 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31527834 |
gacttggagatctggtggggaaccatcaaaactaagagtcaatcttccttcacatgtatgaatccgttttcttatgttagttagcttatactttagctat |
31527933 |
T |
|
| Q |
101 |
gagtaactaattcttttgtggttacttcctga |
132 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
31527934 |
gagtaactaattcttttgtggttaattcctga |
31527965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 7e-47
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 31625993 - 31626115
Alignment:
| Q |
2 |
acttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatg |
101 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||| ||||||||||||||| ||||||| ||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31625993 |
acttggagatctggtgggcaaccatcaaaactatgagtcaatcatcctttacatgtacgaatcatttttcttatgtgagttagcttatactttagctatg |
31626092 |
T |
|
| Q |
102 |
agtaactaattcttttgtggtta |
124 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
31626093 |
agtaactaattcttttgtggtta |
31626115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 13709524 - 13709640
Alignment:
| Q |
8 |
agatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaac |
107 |
Q |
| |
|
|||||||||||| ||| ||||||||||| |||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13709524 |
agatctggtgggcaaccatcaaaactaatagtcaatcatccattacatgtatgaatccttattcttatgttagttagcttatactttagctatgagtaac |
13709623 |
T |
|
| Q |
108 |
taattcttttgtggtta |
124 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
13709624 |
taattctcttgtggtta |
13709640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 40017432 - 40017546
Alignment:
| Q |
10 |
atctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaacta |
109 |
Q |
| |
|
||||||||| ||| ||||||||| | ||||| |||||| | |||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40017432 |
atctggtggacaaccatcaaaactcatagtcagtcatccattacatgtatgaatccttcttcctatgttagttagcttatactttaactatgagtaacta |
40017531 |
T |
|
| Q |
110 |
attcttttgtggtta |
124 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
40017532 |
attcttttgtggtta |
40017546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 36326369 - 36326493
Alignment:
| Q |
4 |
ttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatg----aatcctttttcttatgttagttagcttatactttagcta |
99 |
Q |
| |
|
||||||||||| ||| ||| ||||||||| | |||||||||||| ||| ||||| ||||||| || ||| |||||||| ||| ||||||| ||| |
|
|
| T |
36326369 |
ttggagatctgatggccaaccatcaaaactcatagtcaatcatccaatacacgtatgaatcaatccttgtttttacgttagttatcttgtactttatcta |
36326468 |
T |
|
| Q |
100 |
tgagtaactaattcttttgtggtta |
124 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
36326469 |
tgagtaactaattcttttgtggtta |
36326493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 32576478 - 32576375
Alignment:
| Q |
8 |
agatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaac |
107 |
Q |
| |
|
|||||| |||||| || ||||||||| | ||||| |||||| || ||||||||||||| || |||||||||||| ||| |||||||||||| | |||| |
|
|
| T |
32576478 |
agatctagtgggagaccatcaaaactcacagtcagtcatccaatacttgtatgaatccttgtttttatgttagttatcttctactttagctatcaataac |
32576379 |
T |
|
| Q |
108 |
taat |
111 |
Q |
| |
|
|||| |
|
|
| T |
32576378 |
taat |
32576375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 108; Significance: 1e-54; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 7793 - 7662
Alignment:
| Q |
1 |
gacttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctat |
100 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7793 |
gacttggagatccggtgggaaaccatcaaaactaagagtcaatcatcctctacatgtatgaatcctttttcttatgttagttagcttatactttagttat |
7694 |
T |
|
| Q |
101 |
gagtaactaattcttttgtggttacttcctga |
132 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
7693 |
gagtaactaattcttttgtggttaattcctga |
7662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 1e-54; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 12171427 - 12171550
Alignment:
| Q |
1 |
gacttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctat |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12171427 |
gacttggagatctggtgggaaaccatcaaaactaagagtaaatcatccgtcacatgtatgaatcctttttcttatgttagttagcttctactttagctat |
12171526 |
T |
|
| Q |
101 |
gagtaactaattcttttgtggtta |
124 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
12171527 |
gagtaactaattcttttgtggtta |
12171550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 26063457 - 26063371
Alignment:
| Q |
37 |
agtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaactaattcttttgtggtt |
123 |
Q |
| |
|
|||||||||||| |||||||||||||||| || |||||| ||||| ||| |||||||| ||||||||||||||| ||||||||| |
|
|
| T |
26063457 |
agtcaatcatccaatacatgtatgaatccttgtttttatgtgagttatcttgtactttagatatgagtaactaatttctttgtggtt |
26063371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 647996 - 647893
Alignment:
| Q |
8 |
agatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaac |
107 |
Q |
| |
|
|||| |||||||| || |||| |||| | ||||||| |||| |||| ||||||||||| | |||||| ||||| ||| |||| ||| |||||||||| |
|
|
| T |
647996 |
agatttggtgggagaccatcacaactcatagtcaattatccaatacatatatgaatccttgattttatgtgagttatcttgtactgtagttatgagtaac |
647897 |
T |
|
| Q |
108 |
taat |
111 |
Q |
| |
|
|||| |
|
|
| T |
647896 |
taat |
647893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 651269 - 651166
Alignment:
| Q |
8 |
agatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaac |
107 |
Q |
| |
|
|||| |||||||| || |||| |||| | ||||||| |||| |||| ||||||||||| | |||||| ||||| ||| |||| ||| |||||||||| |
|
|
| T |
651269 |
agatttggtgggagaccatcacaactcatagtcaattatcccatacatatatgaatccttgattttatgtgagttatcttgtactgtagttatgagtaac |
651170 |
T |
|
| Q |
108 |
taat |
111 |
Q |
| |
|
|||| |
|
|
| T |
651169 |
taat |
651166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0500 (Bit Score: 106; Significance: 2e-53; HSPs: 1)
Name: scaffold0500
Description:
Target: scaffold0500; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 2136 - 2265
Alignment:
| Q |
1 |
gacttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctat |
100 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
2136 |
gacttggggatctggtgggaaaccatcaaaactaagagtcaatcatcctttacatgtatgaatcctttctcttatgttagttaacttatactttagctat |
2235 |
T |
|
| Q |
101 |
gagtaactaattcttttgtggttacttcct |
130 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |
|
|
| T |
2236 |
gagtaactaattcttttgtggttaattcct |
2265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 106; Significance: 2e-53; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 3405 - 3284
Alignment:
| Q |
3 |
cttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatga |
102 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3405 |
cttggagatctggtgggcaaccatcaaaactaagagtcaatcatcctttacatgtatgaatccttcttcttatgttagttagcttatactttagctatga |
3306 |
T |
|
| Q |
103 |
gtaactaattcttttgtggtta |
124 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3305 |
gtaactaattcttttgtggtta |
3284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 5e-29; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 32506650 - 32506534
Alignment:
| Q |
4 |
ttggagatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgag |
103 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| | |||||||||||| ||| |||||||||||| || ||| |||||||| ||| ||||||||||||||| |
|
|
| T |
32506650 |
ttggagatctggtgggcaaccatcaaaactcatagtcaatcatccaatacacgtatgaatccttgtttttacgttagttatcttgtactttagctatgag |
32506551 |
T |
|
| Q |
104 |
taactaattcttttgtg |
120 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
32506550 |
taactaattcttttgtg |
32506534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 16190969 - 16190866
Alignment:
| Q |
8 |
agatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaac |
107 |
Q |
| |
|
|||||||||||| ||| ||||||| | | |||||||||||| |||||||||||||||| || |||||||||||| | | |||||||||||| |||||| |
|
|
| T |
16190969 |
agatctggtgggcaaccatcaaaattcatagtcaatcatccaatacatgtatgaatccttgtttttatgttagttatcgtttactttagctataagtaac |
16190870 |
T |
|
| Q |
108 |
taat |
111 |
Q |
| |
|
|||| |
|
|
| T |
16190869 |
taat |
16190866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 1936082 - 1936183
Alignment:
| Q |
10 |
atctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaacta |
109 |
Q |
| |
|
||||||||||| |||||||||||| | | ||| ||||| || |||||||||||| || |||| |||||| ||| ||||||||||||||||||||| |
|
|
| T |
1936082 |
atctggtgggagacaatcaaaactcatattcagtcatctaatactcgtatgaatccttgtttctatggtagttatcttgtactttagctatgagtaacta |
1936181 |
T |
|
| Q |
110 |
at |
111 |
Q |
| |
|
|| |
|
|
| T |
1936182 |
at |
1936183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 13495484 - 13495556
Alignment:
| Q |
52 |
acatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaactaattcttttgtggtta |
124 |
Q |
| |
|
|||||||||||||||| || |||||| |||| ||| |||||||| |||||||||||||| |||||||||| |
|
|
| T |
13495484 |
acatgtatgaatccttgtttttatgtgagttgtcttgtactttagttatgagtaactaatctctttgtggtta |
13495556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 27282842 - 27282784
Alignment:
| Q |
66 |
tttttcttatgttagttagcttatactttagctatgagtaactaattcttttgtggtta |
124 |
Q |
| |
|
||||| |||||| ||||| ||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
27282842 |
ttttttttatgtgagttatcttgtactttagctatgagtaactaatctctttgtggtta |
27282784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 10759574 - 10759677
Alignment:
| Q |
8 |
agatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaac |
107 |
Q |
| |
|
|||| |||||||| || |||| |||| | ||||||| |||| |||| ||||||||||| | |||||| ||||| ||| |||| ||| |||||||||| |
|
|
| T |
10759574 |
agatttggtgggagaccatcacaactcatagtcaattatccaatacatatatgaatccttgattttatgtgagttatcttgtactgtagttatgagtaac |
10759673 |
T |
|
| Q |
108 |
taat |
111 |
Q |
| |
|
|||| |
|
|
| T |
10759674 |
taat |
10759677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 12576048 - 12575989
Alignment:
| Q |
52 |
acatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaactaat |
111 |
Q |
| |
|
||||||||||||| || || |||||||||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
12576048 |
acatgtatgaatcattgtttttatgttagttatcttgtactttagcgatgagtaactaat |
12575989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0665 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: scaffold0665
Description:
Target: scaffold0665; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 437 - 334
Alignment:
| Q |
8 |
agatctggtgggaaacaatcaaaactaagagtcaatcatccttcacatgtatgaatcctttttcttatgttagttagcttatactttagctatgagtaac |
107 |
Q |
| |
|
|||| |||||||| || |||| |||| | ||||||| |||| |||||||||||||||| | |||||| ||||| ||| |||| ||| |||||||||| |
|
|
| T |
437 |
agatttggtgggagaccatcacaactcatagtcaattatccaatacatgtatgaatccttgattttatgtgagttatcttgtactgtagttatgagtaac |
338 |
T |
|
| Q |
108 |
taat |
111 |
Q |
| |
|
|||| |
|
|
| T |
337 |
taat |
334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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