View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5798-13 (Length: 130)
Name: Solexa-NF5798-13
Description: NF5798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5798-13 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 1e-51; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 2638793 - 2638671
Alignment:
| Q |
8 |
attccagaggctccaactacgtgtggtaaggctgaactctttatgtattctcctgccttaagcccattccacatttggggatagaatctaaagttagaac |
107 |
Q |
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| T |
2638793 |
attccagaggctccaactacgggtggtaaggctgaactctttatgcattctcctgccttaagcccattccacatttggggaaagaatctaaagttagaaa |
2638694 |
T |
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| Q |
108 |
ggcagaacagtccgagatttaaa |
130 |
Q |
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| T |
2638693 |
ggcagaacagtccgatatttaaa |
2638671 |
T |
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Target: chr3; HSP #2
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 2627063 - 2626941
Alignment:
| Q |
8 |
attccagaggctccaactacgtgtggtaaggctgaactctttatgtattctcctgccttaagcccattccacatttggggatagaatctaaagttagaac |
107 |
Q |
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| T |
2627063 |
attccagacgctgcagctaccagtggtaaggctgaactctttatgcattctcctgccttaagcccgttccacatttggggaaagaatctaaagttggaaa |
2626964 |
T |
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| Q |
108 |
ggcagaacagtccgagatttaaa |
130 |
Q |
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| T |
2626963 |
ggaagaaccatccgagacttaaa |
2626941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 44003837 - 44003894
Alignment:
| Q |
54 |
attctcctgccttaagcccattccacatttggggatagaatctaaagttagaacggca |
111 |
Q |
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| T |
44003837 |
attctcctggcttaagcccattccacatatggggaaagagtctaaagttggaaaggca |
44003894 |
T |
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