View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5798-14 (Length: 130)
Name: Solexa-NF5798-14
Description: NF5798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5798-14 |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 5e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 43032978 - 43032855
Alignment:
| Q |
1 |
agagatgggggttaatatcaaggatgggttatttccggaacacactggaatcacttagtttgagccattctacaggagtttgtgtaaacaagttgactca |
100 |
Q |
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| T |
43032978 |
agagatgggggttaatatcaaggatgggttatttccggaacacactgaaatcacctagtttgacccattctacaggagtttgtgtaaacaagttgactca |
43032879 |
T |
|
| Q |
101 |
attttcatacctagaattataatt |
124 |
Q |
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|||||||||||||||||||||||| |
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| T |
43032878 |
attttcatacctagaattataatt |
43032855 |
T |
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