View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5798-16 (Length: 127)

Name: Solexa-NF5798-16
Description: NF5798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5798-16
Solexa-NF5798-16
[»] chr7 (8 HSPs)
chr7 (12-127)||(40763172-40763275)
chr7 (12-48)||(7323036-7323072)
chr7 (12-48)||(22521576-22521612)
chr7 (12-47)||(24359791-24359826)
chr7 (12-47)||(29687467-29687502)
chr7 (12-46)||(40194818-40194852)
chr7 (12-47)||(5240415-5240450)
chr7 (12-47)||(29034678-29034713)
[»] chr8 (8 HSPs)
chr8 (57-106)||(42910710-42910759)
chr8 (12-48)||(34714004-34714040)
chr8 (12-48)||(21016140-21016176)
chr8 (16-48)||(33741561-33741593)
chr8 (15-47)||(44874324-44874356)
chr8 (12-47)||(3174447-3174482)
chr8 (17-48)||(4989926-4989957)
chr8 (12-47)||(10694798-10694833)
[»] chr2 (11 HSPs)
chr2 (12-46)||(2966532-2966566)
chr2 (12-48)||(41436468-41436504)
chr2 (12-47)||(6999193-6999228)
chr2 (12-47)||(17056140-17056175)
chr2 (12-47)||(17068587-17068622)
chr2 (12-47)||(17095149-17095184)
chr2 (12-48)||(27495113-27495149)
chr2 (16-47)||(862580-862611)
chr2 (12-47)||(11445402-11445437)
chr2 (12-47)||(17074570-17074605)
chr2 (12-47)||(17118455-17118490)
[»] chr1 (14 HSPs)
chr1 (16-48)||(28850993-28851025)
chr1 (12-47)||(11385972-11386007)
chr1 (12-47)||(33929957-33929992)
chr1 (12-47)||(34874558-34874593)
chr1 (12-47)||(47655451-47655486)
chr1 (12-46)||(42607404-42607438)
chr1 (16-45)||(30222613-30222642)
chr1 (12-48)||(6170631-6170667)
chr1 (16-48)||(29966812-29966844)
chr1 (16-48)||(41147562-41147594)
chr1 (16-47)||(22346321-22346352)
chr1 (12-47)||(24140764-24140799)
chr1 (12-47)||(27209801-27209836)
chr1 (12-47)||(50154464-50154499)
[»] chr6 (2 HSPs)
chr6 (12-47)||(32786060-32786095)
chr6 (12-48)||(10855423-10855458)
[»] chr4 (11 HSPs)
chr4 (12-47)||(35808479-35808514)
chr4 (12-47)||(47188748-47188783)
chr4 (12-47)||(50514696-50514731)
chr4 (12-46)||(23765570-23765604)
chr4 (16-48)||(31754928-31754960)
chr4 (12-47)||(10100196-10100231)
chr4 (16-47)||(19329015-19329046)
chr4 (16-47)||(26040447-26040478)
chr4 (16-47)||(34316810-34316841)
chr4 (12-47)||(41956296-41956331)
chr4 (12-47)||(45688734-45688769)
[»] chr3 (12 HSPs)
chr3 (12-47)||(10854850-10854885)
chr3 (16-47)||(25102408-25102439)
chr3 (12-47)||(36730236-36730271)
chr3 (12-46)||(8715584-8715618)
chr3 (12-46)||(9067471-9067505)
chr3 (12-46)||(12905365-12905399)
chr3 (16-48)||(37509101-37509133)
chr3 (12-47)||(4759933-4759968)
chr3 (12-47)||(12051029-12051064)
chr3 (12-47)||(32415560-32415595)
chr3 (12-47)||(44570469-44570504)
chr3 (12-47)||(46317477-46317512)
[»] chr5 (6 HSPs)
chr5 (16-48)||(39567893-39567925)
chr5 (12-48)||(43414147-43414183)
chr5 (12-47)||(5151480-5151515)
chr5 (12-47)||(13951319-13951354)
chr5 (12-47)||(16315615-16315650)
chr5 (12-47)||(35653338-35653373)
[»] scaffold0062 (3 HSPs)
scaffold0062 (16-47)||(16858-16889)
scaffold0062 (16-47)||(27026-27057)
scaffold0062 (16-47)||(37192-37223)


Alignment Details
Target: chr7 (Bit Score: 71; Significance: 1e-32; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 40763275 - 40763172
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttgaaaccataaagtatttggtaatttccaataaagatgtatcttaattctgttgttctatcggtat 111  Q
    |||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40763275 aatgttgttgaaaccaatgcaaatatgctactttt------------tatttggtaatttccaataaagatgtatcttaattctgttgttctatcagtat 40763188  T
Q  112 attgattaaaataggc 127  Q
    ||||||||||||||||    
T  40763187 attgattaaaataggc 40763172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 7323036 - 7323072
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttga 48  Q
    ||||||||||||||||||||||| |||||||||||||    
T  7323036 aatgttgttgaaaccaatgcaaacatgctacttttga 7323072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 22521612 - 22521576
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttga 48  Q
    ||||||||||||||||||||||| |||||||||||||    
T  22521612 aatgttgttgaaaccaatgcaaacatgctacttttga 22521576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 24359791 - 24359826
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||| ||||||||||||    
T  24359791 aatgttgttgaaaccaatgcaaacatgctacttttg 24359826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 29687502 - 29687467
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||| ||||||||||||    
T  29687502 aatgttgttgaaaccaatgcaaacatgctacttttg 29687467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 40194852 - 40194818
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctactttt 46  Q
    ||||||||||||||||||||||| |||||||||||    
T  40194852 aatgttgttgaaaccaatgcaaacatgctactttt 40194818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 5240415 - 5240450
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    |||||| |||||||||||||||| ||||||||||||    
T  5240415 aatgttattgaaaccaatgcaaacatgctacttttg 5240450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 29034713 - 29034678
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    |||||||||||||| |||||||| ||||||||||||    
T  29034713 aatgttgttgaaactaatgcaaacatgctacttttg 29034678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.0000000000007; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 42910759 - 42910710
Alignment:
Q  57 agtatttggtaatttccaataaagatgtatcttaattctgttgttctatc 106  Q
    ||||||||||||||||||||| ||||| |||||||||| |||||||||||    
T  42910759 agtatttggtaatttccaatagagatgcatcttaattccgttgttctatc 42910710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 34714004 - 34714040
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttga 48  Q
    ||||||||||||||||||||||| |||||||||||||    
T  34714004 aatgttgttgaaaccaatgcaaacatgctacttttga 34714040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 21016140 - 21016176
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttga 48  Q
    |||||||||||| |||||||||| |||||||||||||    
T  21016140 aatgttgttgaagccaatgcaaacatgctacttttga 21016176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 33741561 - 33741593
Alignment:
Q  16 ttgttgaaaccaatgcaaatatgctacttttga 48  Q
    ||||||||||||||||||||||| |||||||||    
T  33741561 ttgttgaaaccaatgcaaatatgttacttttga 33741593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 44874356 - 44874324
Alignment:
Q  15 gttgttgaaaccaatgcaaatatgctacttttg 47  Q
    |||||||||||||||||||| ||||||||||||    
T  44874356 gttgttgaaaccaatgcaaacatgctacttttg 44874324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 3174482 - 3174447
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    |||||||||||||||||| |||| ||||||||||||    
T  3174482 aatgttgttgaaaccaatacaaacatgctacttttg 3174447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 4989957 - 4989926
Alignment:
Q  17 tgttgaaaccaatgcaaatatgctacttttga 48  Q
    |||||||||||||||||| |||||||||||||    
T  4989957 tgttgaaaccaatgcaaacatgctacttttga 4989926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 10694833 - 10694798
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||| ||||||||||||| ||||||||    
T  10694833 aatgttgttgaaatcaatgcaaatatgatacttttg 10694798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 2966566 - 2966532
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctactttt 46  Q
    |||||||||||||||||||||||||||||||||||    
T  2966566 aatgttgttgaaaccaatgcaaatatgctactttt 2966532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 41436504 - 41436468
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttga 48  Q
    ||||||||||||||||||||||| |||||||||||||    
T  41436504 aatgttgttgaaaccaatgcaaacatgctacttttga 41436468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 6999228 - 6999193
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||| ||||||||||||    
T  6999228 aatgttgttgaaaccaatgcaaacatgctacttttg 6999193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 17056140 - 17056175
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    |||||||||||||||||||||||||||||| |||||    
T  17056140 aatgttgttgaaaccaatgcaaatatgctatttttg 17056175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 17068587 - 17068622
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    |||||||||||||||||||||||||||||| |||||    
T  17068587 aatgttgttgaaaccaatgcaaatatgctatttttg 17068622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 17095149 - 17095184
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    |||||||||||||||||||||||||||||| |||||    
T  17095149 aatgttgttgaaaccaatgcaaatatgctatttttg 17095184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 27495149 - 27495113
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttga 48  Q
    ||||||||||||||||||||||| || ||||||||||    
T  27495149 aatgttgttgaaaccaatgcaaacatactacttttga 27495113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 862611 - 862580
Alignment:
Q  16 ttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||| ||||||||||||    
T  862611 ttgttgaaaccaatgcaaacatgctacttttg 862580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 11445402 - 11445437
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||| ||| ||||||||    
T  11445402 aatgttgttgaaaccaatgcaaacatgttacttttg 11445437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 17074570 - 17074605
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    |||||||||||||| ||||||||||||||| |||||    
T  17074570 aatgttgttgaaactaatgcaaatatgctatttttg 17074605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 17118455 - 17118490
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||||||| || |||||    
T  17118455 aatgttgttgaaaccaatgcaaatatgttatttttg 17118490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.0000000006; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 28850993 - 28851025
Alignment:
Q  16 ttgttgaaaccaatgcaaatatgctacttttga 48  Q
    |||||||||||||||||||||||||||||||||    
T  28850993 ttgttgaaaccaatgcaaatatgctacttttga 28851025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 11386007 - 11385972
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||| ||||||||||||    
T  11386007 aatgttgttgaaaccaatgcaaacatgctacttttg 11385972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 33929992 - 33929957
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||| ||||||||||||    
T  33929992 aatgttgttgaaaccaatgcaaacatgctacttttg 33929957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 34874593 - 34874558
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||| ||||||||||||    
T  34874593 aatgttgttgaaaccaatgcaaacatgctacttttg 34874558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 47655451 - 47655486
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||| ||||||||||||    
T  47655451 aatgttgttgaaaccaatgcaaacatgctacttttg 47655486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 42607404 - 42607438
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctactttt 46  Q
    ||||||||||||||||||||||| |||||||||||    
T  42607404 aatgttgttgaaaccaatgcaaacatgctactttt 42607438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 30222642 - 30222613
Alignment:
Q  16 ttgttgaaaccaatgcaaatatgctacttt 45  Q
    ||||||||||||||||||||||||||||||    
T  30222642 ttgttgaaaccaatgcaaatatgctacttt 30222613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 6170631 - 6170667
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttga 48  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  6170631 aatgttgttgaaaccaatgcaaacatgttacttttga 6170667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 29966844 - 29966812
Alignment:
Q  16 ttgttgaaaccaatgcaaatatgctacttttga 48  Q
    ||||||||||||||||||| |||||||||||||    
T  29966844 ttgttgaaaccaatgcaaacatgctacttttga 29966812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 41147562 - 41147594
Alignment:
Q  16 ttgttgaaaccaatgcaaatatgctacttttga 48  Q
    ||||||||||||||||||| |||||||||||||    
T  41147562 ttgttgaaaccaatgcaaacatgctacttttga 41147594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 22346321 - 22346352
Alignment:
Q  16 ttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||| ||||||||||||    
T  22346321 ttgttgaaaccaatgcaaacatgctacttttg 22346352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 24140799 - 24140764
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||| |||||| |||||    
T  24140799 aatgttgttgaaaccaatgcaaacatgctatttttg 24140764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 27209801 - 27209836
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||| || |||||||||    
T  27209801 aatgttgttgaaaccaatgcaaacatcctacttttg 27209836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 50154499 - 50154464
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||| ||| ||||||||    
T  50154499 aatgttgttgaaaccaatgcaaacatgttacttttg 50154464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 32786095 - 32786060
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||| ||||||||||||    
T  32786095 aatgttgttgaaaccaatgcaaacatgctacttttg 32786060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 10855458 - 10855423
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttga 48  Q
    |||||||||||||||| ||||||||||||||||||||    
T  10855458 aatgttgttgaaacca-tgcaaatatgctacttttga 10855423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 35808479 - 35808514
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||| ||||||||||||    
T  35808479 aatgttgttgaaaccaatgcaaacatgctacttttg 35808514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 47188748 - 47188783
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||| ||||||||||||    
T  47188748 aatgttgttgaaaccaatgcaaacatgctacttttg 47188783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 50514696 - 50514731
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||| ||||||||||||    
T  50514696 aatgttgttgaaaccaatgcaaacatgctacttttg 50514731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 23765604 - 23765570
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctactttt 46  Q
    ||||||||||||||||||||||| |||||||||||    
T  23765604 aatgttgttgaaaccaatgcaaacatgctactttt 23765570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 31754960 - 31754928
Alignment:
Q  16 ttgttgaaaccaatgcaaatatgctacttttga 48  Q
    ||||||||||||||||||| |||||||||||||    
T  31754960 ttgttgaaaccaatgcaaacatgctacttttga 31754928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 10100196 - 10100231
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||| ||| ||||||||    
T  10100196 aatgttgttgaaaccaatgcaaacatgttacttttg 10100231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 19329015 - 19329046
Alignment:
Q  16 ttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||| ||||||||||||    
T  19329015 ttgttgaaaccaatgcaaacatgctacttttg 19329046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 26040447 - 26040478
Alignment:
Q  16 ttgttgaaaccaatgcaaatatgctacttttg 47  Q
    |||||||| |||||||||||||||||||||||    
T  26040447 ttgttgaagccaatgcaaatatgctacttttg 26040478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 34316810 - 34316841
Alignment:
Q  16 ttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||| ||||||||||||    
T  34316810 ttgttgaaaccaatgcaaacatgctacttttg 34316841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 41956296 - 41956331
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    |||||||||||| |||||||||| ||||||||||||    
T  41956296 aatgttgttgaagccaatgcaaacatgctacttttg 41956331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 45688769 - 45688734
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    |||||||||||||| |||||||| ||||||||||||    
T  45688769 aatgttgttgaaactaatgcaaacatgctacttttg 45688734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 10854885 - 10854850
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||| ||||||||||||    
T  10854885 aatgttgttgaaaccaatgcaaacatgctacttttg 10854850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 25102408 - 25102439
Alignment:
Q  16 ttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||||||||||||    
T  25102408 ttgttgaaaccaatgcaaatatgctacttttg 25102439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 36730236 - 36730271
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||| ||||||||||||    
T  36730236 aatgttgttgaaaccaatgcaaacatgctacttttg 36730271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 8715584 - 8715618
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctactttt 46  Q
    ||||||||||||||||||||||| |||||||||||    
T  8715584 aatgttgttgaaaccaatgcaaacatgctactttt 8715618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 9067471 - 9067505
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctactttt 46  Q
    ||||||||||||||||||||||| |||||||||||    
T  9067471 aatgttgttgaaaccaatgcaaacatgctactttt 9067505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 12905365 - 12905399
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctactttt 46  Q
    ||||||||||||||||||||||| |||||||||||    
T  12905365 aatgttgttgaaaccaatgcaaacatgctactttt 12905399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 37509133 - 37509101
Alignment:
Q  16 ttgttgaaaccaatgcaaatatgctacttttga 48  Q
    ||||||||||||||||||||||| |||||||||    
T  37509133 ttgttgaaaccaatgcaaatatgttacttttga 37509101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 4759933 - 4759968
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||| ||| ||||||||    
T  4759933 aatgttgttgaaaccaatgcaaacatgttacttttg 4759968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 12051064 - 12051029
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||| ||||||||| ||||||||||||    
T  12051064 aatgttgttgaaaacaatgcaaacatgctacttttg 12051029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 32415595 - 32415560
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||| ||| ||||||||    
T  32415595 aatgttgttgaaaccaatgcaaacatgttacttttg 32415560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 44570469 - 44570504
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||| ||||||||| ||||||||||||    
T  44570469 aatgttgttgaaatcaatgcaaacatgctacttttg 44570504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 46317512 - 46317477
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||| ||| ||||||||    
T  46317512 aatgttgttgaaaccaatgcaaacatgttacttttg 46317477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 39567925 - 39567893
Alignment:
Q  16 ttgttgaaaccaatgcaaatatgctacttttga 48  Q
    ||||||||||||||||||| |||||||||||||    
T  39567925 ttgttgaaaccaatgcaaacatgctacttttga 39567893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 43414147 - 43414183
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttga 48  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  43414147 aatgttgttgaaaccaatgcaaacatgttacttttga 43414183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 5151515 - 5151480
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    |||||||||||||| |||||||| ||||||||||||    
T  5151515 aatgttgttgaaactaatgcaaacatgctacttttg 5151480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 13951319 - 13951354
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||  ||||||||||||    
T  13951319 aatgttgttgaaaccaatgcaagcatgctacttttg 13951354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 16315615 - 16315650
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||| | ||||||||||    
T  16315615 aatgttgttgaaaccaatgcaaacacgctacttttg 16315650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 35653338 - 35653373
Alignment:
Q  12 aatgttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||||||| ||| ||||||||    
T  35653338 aatgttgttgaaaccaatgcaaacatggtacttttg 35653373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 28; Significance: 0.0000006; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 16858 - 16889
Alignment:
Q  16 ttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||| ||||||||||||    
T  16858 ttgttgaaaccaatgcaaacatgctacttttg 16889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 27026 - 27057
Alignment:
Q  16 ttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||| ||||||||||||    
T  27026 ttgttgaaaccaatgcaaacatgctacttttg 27057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 37192 - 37223
Alignment:
Q  16 ttgttgaaaccaatgcaaatatgctacttttg 47  Q
    ||||||||||||||||||| ||||||||||||    
T  37192 ttgttgaaaccaatgcaaacatgctacttttg 37223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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