View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5798-17 (Length: 126)
Name: Solexa-NF5798-17
Description: NF5798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5798-17 |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 8e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 43032539 - 43032662
Alignment:
| Q |
1 |
tcttttatgaaatgtttgtgatatatgctgtaatatctgaaattgaaactggttaaaattgattctgcaactttgttcctgtgcctatacttgttttgta |
100 |
Q |
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| T |
43032539 |
tcttttatgacatgtttgtgatatatgctgtaatatctgaaattgaaactggttaaaattgattctgcaactttgttcctgtgcctatacttgttttgta |
43032638 |
T |
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| Q |
101 |
gttggatctattcacttactgata |
124 |
Q |
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| T |
43032639 |
gttggatctattcacttactgata |
43032662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 43048258 - 43048381
Alignment:
| Q |
1 |
tcttttatgaaatgtttgtgatatatgctgtaatatctgaaattgaaactggttaaaattgattctgcaactttgttcctgtgcctatacttgttttgta |
100 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||||||| |||| |||||||| ||||||||||||||||| ||||| |||| |||||| |
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| T |
43048258 |
tcttttatgtcatgtttgtgatatatgctgtaacatctgaaattgaaacttgttagaattgattttgcaactttgttcctgtacctatgcttgctttgta |
43048357 |
T |
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| Q |
101 |
gttggatctattcacttactgata |
124 |
Q |
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| T |
43048358 |
gttggatctattcacttagtgata |
43048381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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