View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5798-18 (Length: 120)
Name: Solexa-NF5798-18
Description: NF5798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5798-18 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 97; Significance: 4e-48; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 4e-48
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 17723275 - 17723163
Alignment:
| Q |
8 |
cgaacaccctcacctttgatggtacagggctgtacaagactcgcattataaccctgccaacttcagcatcgtattcggaactgtacacgttctagtgtaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| |
|
|
| T |
17723275 |
cgaacaccctcacctttgatggtacagggctgtacaagactcacattataaccctgccaacttcatcatcgtattcggaactgtacgcattctagtgtaa |
17723176 |
T |
|
| Q |
108 |
tatcgaataacct |
120 |
Q |
| |
|
||||||||||||| |
|
|
| T |
17723175 |
tatcgaataacct |
17723163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 4e-48
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 19024504 - 19024392
Alignment:
| Q |
8 |
cgaacaccctcacctttgatggtacagggctgtacaagactcgcattataaccctgccaacttcagcatcgtattcggaactgtacacgttctagtgtaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| |
|
|
| T |
19024504 |
cgaacaccctcacctttgatggtacagggctgtacaagactcacattataaccctgccaacttcatcatcgtattcggaactgtacgcattctagtgtaa |
19024405 |
T |
|
| Q |
108 |
tatcgaataacct |
120 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19024404 |
tatcgaataacct |
19024392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 18113685 - 18113797
Alignment:
| Q |
8 |
cgaacaccctcacctttgatggtacagggctgtacaagactcgcattataaccctgccaacttcagcatcgtattcggaactgtacacgttctagtgtaa |
107 |
Q |
| |
|
||||||||||| |||||||| |||||| |||| || |||| | ||| ||||||||||| |||||| |||| || || | |||||| |||||| |||||| |
|
|
| T |
18113685 |
cgaacaccctctcctttgatagtacagcgctgcaccagacacacataataaccctgcccacttcatcatcatactccaagctgtacgcgttctggtgtaa |
18113784 |
T |
|
| Q |
108 |
tatcgaataacct |
120 |
Q |
| |
|
| |||||||||| |
|
|
| T |
18113785 |
tgccgaataacct |
18113797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 19459663 - 19459772
Alignment:
| Q |
8 |
cgaacaccctcacctttgatggtacagggctgtacaagactcgcattataaccctgccaacttcagcatcgtattcggaactgtacacgttctagtgtaa |
107 |
Q |
| |
|
|||||||| || |||||||| |||||| ||| ||||||||| | | |||||| |||| |||||| ||| |||| | ||||||||||||| |||||| |
|
|
| T |
19459663 |
cgaacaccatctcctttgatagtacagcactgcacaagactcacgtaataaccatgcccacttcatcat---attccaagctgtacacgttctggtgtaa |
19459759 |
T |
|
| Q |
108 |
tatcgaataacct |
120 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
19459760 |
tgtcgaataacct |
19459772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University