View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5798-19 (Length: 110)

Name: Solexa-NF5798-19
Description: NF5798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5798-19
Solexa-NF5798-19
[»] chr4 (37 HSPs)
chr4 (1-110)||(2624573-2624683)
chr4 (1-58)||(49410300-49410357)
chr4 (1-60)||(9283988-9284047)
chr4 (1-60)||(9528830-9528889)
chr4 (8-63)||(44947496-44947551)
chr4 (1-58)||(4643935-4643992)
chr4 (1-58)||(25273960-25274017)
chr4 (8-57)||(45227997-45228046)
chr4 (1-58)||(47417739-47417796)
chr4 (8-58)||(6972894-6972944)
chr4 (1-59)||(10359501-10359559)
chr4 (1-51)||(43153976-43154026)
chr4 (1-59)||(46991084-46991142)
chr4 (1-58)||(12265531-12265588)
chr4 (1-58)||(34024393-34024450)
chr4 (1-58)||(35964930-35964987)
chr4 (13-58)||(37188550-37188595)
chr4 (1-58)||(43444470-43444527)
chr4 (1-58)||(53616605-53616662)
chr4 (2-58)||(2115543-2115599)
chr4 (8-60)||(18138866-18138918)
chr4 (8-60)||(49126079-49126131)
chr4 (1-60)||(52097868-52097928)
chr4 (1-52)||(14183879-14183930)
chr4 (1-52)||(20569332-20569383)
chr4 (1-48)||(31381637-31381684)
chr4 (1-58)||(868239-868296)
chr4 (1-58)||(10389709-10389766)
chr4 (1-58)||(29965712-29965769)
chr4 (1-58)||(49680615-49680672)
chr4 (1-58)||(50766467-50766524)
chr4 (11-63)||(8009311-8009363)
chr4 (8-52)||(38706671-38706715)
chr4 (9-52)||(1531993-1532036)
chr4 (8-58)||(36184617-36184667)
chr4 (1-58)||(51318062-51318119)
chr4 (1-40)||(3336129-3336168)
[»] chr1 (37 HSPs)
chr1 (1-58)||(39987458-39987515)
chr1 (8-58)||(50166054-50166104)
chr1 (1-58)||(5324513-5324570)
chr1 (1-58)||(28035208-28035265)
chr1 (1-58)||(50272095-50272152)
chr1 (8-60)||(51868598-51868650)
chr1 (8-58)||(7342798-7342848)
chr1 (8-58)||(9172566-9172616)
chr1 (8-58)||(9180548-9180598)
chr1 (1-47)||(9687170-9687216)
chr1 (1-59)||(19715849-19715907)
chr1 (9-58)||(3871485-3871534)
chr1 (13-58)||(14545598-14545643)
chr1 (2-63)||(27872808-27872869)
chr1 (1-58)||(35584573-35584630)
chr1 (1-58)||(50148439-50148496)
chr1 (1-57)||(20266371-20266427)
chr1 (1-57)||(30879144-30879200)
chr1 (2-58)||(45805783-45805839)
chr1 (11-58)||(30818306-30818353)
chr1 (16-63)||(40880963-40881010)
chr1 (8-58)||(25406239-25406289)
chr1 (1-63)||(45426016-45426078)
chr1 (1-58)||(5701328-5701385)
chr1 (1-58)||(7997858-7997915)
chr1 (1-58)||(48365720-48365777)
chr1 (2-58)||(18569265-18569321)
chr1 (1-52)||(31836876-31836927)
chr1 (15-58)||(40646757-40646800)
chr1 (8-58)||(51871939-51871989)
chr1 (1-58)||(7312060-7312117)
chr1 (9-58)||(11454012-11454061)
chr1 (8-52)||(9919465-9919509)
chr1 (1-57)||(33291374-33291430)
chr1 (1-33)||(33817161-33817193)
chr1 (1-33)||(33876631-33876663)
chr1 (1-32)||(34519201-34519232)
[»] chr3 (30 HSPs)
chr3 (1-60)||(21488153-21488212)
chr3 (8-58)||(25631481-25631531)
chr3 (1-58)||(14464572-14464629)
chr3 (1-60)||(38440534-38440593)
chr3 (1-58)||(46178631-46178688)
chr3 (1-57)||(31794133-31794189)
chr3 (1-52)||(2342525-2342576)
chr3 (1-60)||(36734645-36734704)
chr3 (8-58)||(3848874-3848924)
chr3 (2-52)||(30648680-30648730)
chr3 (8-58)||(50611373-50611423)
chr3 (1-58)||(12116160-12116217)
chr3 (1-58)||(17237867-17237924)
chr3 (1-58)||(22803084-22803141)
chr3 (13-58)||(29503535-29503580)
chr3 (1-58)||(32607531-32607588)
chr3 (1-58)||(39917353-39917410)
chr3 (1-58)||(46934704-46934761)
chr3 (1-57)||(6910665-6910721)
chr3 (2-58)||(44907354-44907410)
chr3 (2-58)||(49552179-49552235)
chr3 (3-58)||(25162500-25162555)
chr3 (1-52)||(36906184-36906235)
chr3 (8-52)||(38854997-38855041)
chr3 (1-57)||(42719579-42719635)
chr3 (1-44)||(35499167-35499210)
chr3 (1-52)||(51202215-51202266)
chr3 (8-58)||(4178634-4178684)
chr3 (1-58)||(25849872-25849929)
chr3 (23-58)||(32701571-32701606)
[»] scaffold0311 (1 HSPs)
scaffold0311 (1-58)||(8756-8813)
[»] chr7 (34 HSPs)
chr7 (1-58)||(42408427-42408484)
chr7 (1-58)||(26492430-26492487)
chr7 (1-58)||(42311345-42311402)
chr7 (1-57)||(14627835-14627891)
chr7 (1-60)||(32684733-32684792)
chr7 (1-63)||(6002086-6002148)
chr7 (1-63)||(17222950-17223012)
chr7 (8-58)||(22927825-22927875)
chr7 (2-60)||(23085587-23085645)
chr7 (8-58)||(35496130-35496180)
chr7 (9-58)||(6558950-6558999)
chr7 (1-58)||(34773776-34773833)
chr7 (13-58)||(42067017-42067062)
chr7 (1-58)||(46822080-46822137)
chr7 (1-57)||(46339119-46339175)
chr7 (1-52)||(20116647-20116698)
chr7 (8-58)||(433646-433696)
chr7 (8-58)||(13592463-13592513)
chr7 (1-58)||(1448785-1448842)
chr7 (1-58)||(2843196-2843253)
chr7 (1-58)||(19560063-19560120)
chr7 (13-58)||(45198988-45199033)
chr7 (1-57)||(35667188-35667244)
chr7 (9-48)||(7640740-7640779)
chr7 (9-52)||(20083411-20083453)
chr7 (8-58)||(1485212-1485262)
chr7 (1-35)||(23786640-23786674)
chr7 (1-35)||(26583779-26583813)
chr7 (13-58)||(21266467-21266512)
chr7 (1-58)||(35261363-35261420)
chr7 (13-58)||(48207977-48208022)
chr7 (1-45)||(17611190-17611234)
chr7 (1-52)||(31235753-31235804)
chr7 (1-52)||(32521888-32521939)
[»] chr5 (24 HSPs)
chr5 (1-58)||(19259767-19259824)
chr5 (1-58)||(41184395-41184452)
chr5 (1-58)||(2057793-2057850)
chr5 (1-58)||(16981357-16981414)
chr5 (1-58)||(34881785-34881842)
chr5 (2-58)||(42579956-42580012)
chr5 (8-58)||(19280900-19280950)
chr5 (8-57)||(4954066-4954115)
chr5 (1-58)||(20257650-20257707)
chr5 (13-58)||(21060238-21060283)
chr5 (1-58)||(26578319-26578376)
chr5 (1-58)||(27266814-27266871)
chr5 (12-57)||(35475294-35475339)
chr5 (8-52)||(27576311-27576355)
chr5 (13-60)||(30298286-30298333)
chr5 (8-58)||(7150290-7150340)
chr5 (2-52)||(11768070-11768120)
chr5 (1-63)||(43261769-43261831)
chr5 (1-58)||(3271357-3271414)
chr5 (1-58)||(18677420-18677477)
chr5 (2-57)||(30371794-30371849)
chr5 (1-63)||(42886545-42886606)
chr5 (1-58)||(7886893-7886950)
chr5 (23-58)||(10722841-10722876)
[»] chr2 (30 HSPs)
chr2 (1-58)||(3269066-3269123)
chr2 (1-58)||(3269625-3269682)
chr2 (1-58)||(3270184-3270241)
chr2 (1-58)||(3725249-3725306)
chr2 (1-58)||(8308239-8308296)
chr2 (1-52)||(34599056-34599107)
chr2 (1-58)||(2808427-2808484)
chr2 (1-58)||(6173701-6173758)
chr2 (1-58)||(7015666-7015723)
chr2 (1-58)||(36234077-36234134)
chr2 (1-57)||(8805935-8805991)
chr2 (1-57)||(9986298-9986354)
chr2 (10-58)||(40659887-40659935)
chr2 (8-58)||(32679065-32679115)
chr2 (1-58)||(459229-459286)
chr2 (1-58)||(27249106-27249163)
chr2 (1-58)||(27949495-27949552)
chr2 (1-58)||(30420747-30420804)
chr2 (13-58)||(32913321-32913366)
chr2 (1-58)||(40626012-40626069)
chr2 (8-51)||(22421811-22421854)
chr2 (8-58)||(20047037-20047087)
chr2 (13-63)||(27477229-27477279)
chr2 (8-58)||(41431104-41431154)
chr2 (1-58)||(84136-84192)
chr2 (13-58)||(21570363-21570408)
chr2 (2-57)||(25087107-25087162)
chr2 (17-58)||(38575440-38575481)
chr2 (2-58)||(39641813-39641869)
chr2 (23-58)||(33229095-33229130)
[»] chr6 (21 HSPs)
chr6 (1-60)||(12653009-12653068)
chr6 (1-58)||(7881057-7881114)
chr6 (1-57)||(4984523-4984579)
chr6 (11-58)||(8196362-8196409)
chr6 (1-58)||(7875999-7876056)
chr6 (1-58)||(8497032-8497089)
chr6 (1-58)||(25064301-25064358)
chr6 (1-58)||(33110676-33110733)
chr6 (2-58)||(12165905-12165961)
chr6 (2-58)||(16419224-16419280)
chr6 (11-58)||(4088535-4088582)
chr6 (8-63)||(35001662-35001717)
chr6 (8-58)||(4468630-4468680)
chr6 (8-58)||(10228751-10228801)
chr6 (8-58)||(33740533-33740583)
chr6 (13-58)||(17237241-17237286)
chr6 (2-48)||(4351961-4352007)
chr6 (1-63)||(8028068-8028130)
chr6 (1-58)||(23947273-23947330)
chr6 (1-58)||(28635076-28635133)
chr6 (2-58)||(33543577-33543633)
[»] chr8 (26 HSPs)
chr8 (1-63)||(42447977-42448039)
chr8 (1-58)||(11464243-11464300)
chr8 (1-58)||(27747068-27747125)
chr8 (1-58)||(32724436-32724493)
chr8 (8-58)||(33896161-33896211)
chr8 (1-58)||(4809036-4809093)
chr8 (2-51)||(17949308-17949357)
chr8 (1-58)||(23851449-23851506)
chr8 (9-58)||(43890079-43890128)
chr8 (1-58)||(44099889-44099946)
chr8 (1-63)||(9498549-9498611)
chr8 (8-58)||(28239912-28239962)
chr8 (8-58)||(29777298-29777348)
chr8 (13-51)||(43135541-43135579)
chr8 (1-50)||(2655942-2655991)
chr8 (8-57)||(9072797-9072846)
chr8 (1-58)||(9619312-9619369)
chr8 (13-58)||(11196972-11197017)
chr8 (13-58)||(11725764-11725809)
chr8 (1-52)||(16794364-16794415)
chr8 (12-57)||(14906879-14906924)
chr8 (1-58)||(15597122-15597179)
chr8 (13-58)||(19876294-19876339)
chr8 (9-58)||(43192301-43192350)
chr8 (1-57)||(34611876-34611932)
chr8 (13-60)||(33342520-33342566)
[»] scaffold0014 (1 HSPs)
scaffold0014 (13-58)||(201328-201373)
[»] scaffold0426 (1 HSPs)
scaffold0426 (1-58)||(6370-6427)
[»] scaffold0146 (1 HSPs)
scaffold0146 (1-58)||(16275-16332)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-57)||(83394-83450)
[»] scaffold0495 (1 HSPs)
scaffold0495 (8-58)||(5470-5520)
[»] scaffold0003 (1 HSPs)
scaffold0003 (11-58)||(361754-361801)


Alignment Details
Target: chr4 (Bit Score: 75; Significance: 5e-35; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 5e-35
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 2624573 - 2624683
Alignment:
Q  1 gattcagattgaaagat-cgattattcaatcaaagaattgggcgtcaacgttgtagatctgaagcacgggtatcgttatatgctattaaatgaggcgttg 99  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| |||||||||||||||||| || ||||    
T  2624573 gattcatattgaaagattcgattattcaatcaaagaattgggcgtcaacgttgcagatctggagcatgggtattgttatatgctattaaatggggtgttg 2624672  T
Q  100 tgagtttgttc 110  Q
    |||||||||||    
T  2624673 tgagtttgttc 2624683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 49410300 - 49410357
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  49410300 gattcatattgaaagatcgattattcaatcaaagatttgggcgtcaacgttgcagatc 49410357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 9283988 - 9284047
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctg 60  Q
    |||||| ||||||||||||||| |||||||||||| |||||||||||||||| |||||||    
T  9283988 gattcatattgaaagatcgattgttcaatcaaagatttgggcgtcaacgttgcagatctg 9284047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 9528889 - 9528830
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctg 60  Q
    |||||| |||||||||||||||||||||||||||| |||| ||||||||||| |||||||    
T  9528889 gattcatattgaaagatcgattattcaatcaaagatttggccgtcaacgttgcagatctg 9528830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 44947496 - 44947551
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctgaag 63  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||    
T  44947496 attgaaagatcgattattcaatcaaagatttgggcgtcaacgttgcagatccgaag 44947551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 4643935 - 4643992
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||| |||| |||||    
T  4643935 gattcatattgaaagatcgattattcaatcaaagatttgggcgtcaaagttgcagatc 4643992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 25273960 - 25274017
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||||||||||| | |||||||||||||||| |||||    
T  25273960 gattcatattgaaagatcgattattcaatcaaaaatttgggcgtcaacgttgcagatc 25274017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 45228046 - 45227997
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagat 57  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  45228046 attgaaagatcgattattcaatcaaagatttgggcgtcaacgttgcagat 45227997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 47417739 - 47417796
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||||||| |||||||||||| |||||||||||||||| |||||    
T  47417739 gattcatattgaaagatcgattgttcaatcaaagatttgggcgtcaacgttgcagatc 47417796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 6972894 - 6972944
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||||||||||||||||||  |||||||||||||||| |||||    
T  6972894 attgaaagatcgattattcaatcaaaggtttgggcgtcaacgttgcagatc 6972944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 10359559 - 10359501
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatct 59  Q
    |||||| |||||||||||||||||||||| ||||| |||||| ||||||||| ||||||    
T  10359559 gattcatattgaaagatcgattattcaataaaagatttgggcatcaacgttgcagatct 10359501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 43154026 - 43153976
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgtt 51  Q
    |||||| |||||||||||||||||||||||||||| ||| |||||||||||    
T  43154026 gattcatattgaaagatcgattattcaatcaaagatttgagcgtcaacgtt 43153976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 46991142 - 46991084
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatct 59  Q
    |||||| ||||||| |||||||||||||||||||| ||||| |||||||||| ||||||    
T  46991142 gattcatattgaaatatcgattattcaatcaaagatttgggtgtcaacgttgcagatct 46991084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12265531 - 12265588
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||| |||||||||||||||| ||| |||||||||||| |||||    
T  12265531 gattcatattgaaagatcaattattcaatcaaagatttgagcgtcaacgttgcagatc 12265588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 34024450 - 34024393
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||||||||||||||||| || ||| |||||||||||| |||||    
T  34024450 gattcatattgaaagatcgattattcaatcaacgatttgagcgtcaacgttgcagatc 34024393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 35964987 - 35964930
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||| |||||||||||||||||||||||| |||| ||||||||||| |||||    
T  35964987 gattcatattaaaagatcgattattcaatcaaagatttggacgtcaacgttgcagatc 35964930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 37188595 - 37188550
Alignment:
Q  13 aagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||    
T  37188595 aagatcgattattcaatcaaagatttgggcgtcaacgttgcagatc 37188550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 43444470 - 43444527
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||||||| ||||||||||||  ||||||||||||||| |||||    
T  43444470 gattcatattgaaagatcgattgttcaatcaaagatatgggcgtcaacgttgcagatc 43444527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 53616662 - 53616605
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||| ||| |||||||||||| |||||||||||||||| |||||    
T  53616662 gattcatattgaaagatcaattgttcaatcaaagatttgggcgtcaacgttgcagatc 53616605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 2115599 - 2115543
Alignment:
Q  2 attcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||| ||||||||||||||| |||||||||| | |||||||||||||||| |||||    
T  2115599 attcatattgaaagatcgattgttcaatcaaaaatttgggcgtcaacgttgcagatc 2115543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 18138918 - 18138866
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctg 60  Q
    |||||||||||||||||||||||| | | |||||||||||||||| |||||||    
T  18138918 attgaaagatcgattattcaatcacatatttgggcgtcaacgttgcagatctg 18138866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 49126131 - 49126079
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctg 60  Q
    |||||||||||||||||||||||| | | |||||||||||||||| |||||||    
T  49126131 attgaaagatcgattattcaatcacatatttgggcgtcaacgttgcagatctg 49126079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 52097928 - 52097868
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattggg-cgtcaacgttgtagatctg 60  Q
    |||||| ||||||||||| |||||||||||||||| ||||| ||||||||||| |||||||    
T  52097928 gattcatattgaaagatcaattattcaatcaaagatttgggccgtcaacgttgcagatctg 52097868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 14183879 - 14183930
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttg 52  Q
    |||||| ||||||||||||| |||||||||||||| || |||||||||||||    
T  14183879 gattcatattgaaagatcgactattcaatcaaagattttggcgtcaacgttg 14183930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 20569332 - 20569383
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttg 52  Q
    |||||| |||||||||||||||||||||||||||| || || ||||||||||    
T  20569332 gattcatattgaaagatcgattattcaatcaaagattttggtgtcaacgttg 20569383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 31381684 - 31381637
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaac 48  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||||||    
T  31381684 gattcatattaaaagatcgattattcaatcaaagatttgggcgtcaac 31381637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 868239 - 868296
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||| |||||||||||||||| ||||  || |||||||||||||    
T  868239 gattcatattgaaagatcaattattcaatcaaagatttggatgtgaacgttgtagatc 868296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 10389766 - 10389709
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||| ||||||||||||||||| || ||| |||||||||||| |||||    
T  10389766 gattcatattgaaatatcgattattcaatcaacgatttgagcgtcaacgttgcagatc 10389709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 29965712 - 29965769
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||| |||| |||||||||||| |||||| ||||||||| |||||    
T  29965712 gattcatattgaaagattgattgttcaatcaaagatttgggcatcaacgttgcagatc 29965769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 49680615 - 49680672
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||| |||| |||||||||| | |||||||||||||||| |||||    
T  49680615 gattcatattgaaagatagattgttcaatcaaatatttgggcgtcaacgttgcagatc 49680672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 50766524 - 50766467
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||| ||| |||||||||||| ||| |||||||||||| |||||    
T  50766524 gattcatattgaaagatctattgttcaatcaaagatttgagcgtcaacgttgcagatc 50766467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 8009363 - 8009311
Alignment:
Q  11 gaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctgaag 63  Q
    ||||||| ||||||||||||||| | |||||||||||||||||| ||| ||||    
T  8009363 gaaagattgattattcaatcaaaaatttgggcgtcaacgttgtatatccgaag 8009311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 38706715 - 38706671
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttg 52  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||    
T  38706715 attgaaagatcgattattcaatcgaagatttgggcatcaacgttg 38706671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 1531993 - 1532036
Alignment:
Q  9 ttgaaagatcgattattcaatcaaagaattgggcgtcaacgttg 52  Q
    |||||||||| |||||||||||||| | ||||||||||||||||    
T  1531993 ttgaaagatcaattattcaatcaaaaatttgggcgtcaacgttg 1532036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 36184617 - 36184667
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||| |||||||||||| || || || ||||||||||||||||    
T  36184617 attgaaagatcggttattcaatcaatgattttggtgtcaacgttgtagatc 36184667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 51318062 - 51318119
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||| |||| |||||||||  | |||||||||||||||| |||||    
T  51318062 gattcatattgaaagattgattgttcaatcaacaatttgggcgtcaacgttgcagatc 51318119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 3336168 - 3336129
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgg 40  Q
    |||||| |||||||||| ||||||||||||||||| ||||    
T  3336168 gattcatattgaaagattgattattcaatcaaagatttgg 3336129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 4e-20; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 39987458 - 39987515
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39987458 gattcatattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgcagatc 39987515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 50166104 - 50166054
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  50166104 attgaaagatcgattattcaatcaaagatttggacgtcaacgttgtagatc 50166054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5324570 - 5324513
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||||||||| |||||    
T  5324570 gattcatattgaaaaatcgattattcaatcaaagatttgggcgtcaacgttgcagatc 5324513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 28035208 - 28035265
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||| ||| |||||    
T  28035208 gattcatattgaaagatcgattattcaatcaaagatttgggcgtcaacattgcagatc 28035265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 50272152 - 50272095
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||||||||| |||||    
T  50272152 gattcatattgaaaaatcgattattcaatcaaagatttgggcgtcaacgttgcagatc 50272095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 51868650 - 51868598
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctg 60  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| |||||||    
T  51868650 attgaaagatcgattattcaatcaaagatttggacgtcaacgttgcagatctg 51868598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 7342798 - 7342848
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  7342798 attgaaagatcgattattcaatcaaagatttggacgtcaacgttgcagatc 7342848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 9172566 - 9172616
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  9172566 attgaaagatcgattattcaatcaaagatttggacgtcaacgttgcagatc 9172616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 9180548 - 9180598
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  9180548 attgaaagatcgattattcaatcaaagatttggacgtcaacgttgcagatc 9180598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9687216 - 9687170
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaa 47  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||    
T  9687216 gattcatattgaaagatcgattattcaatcaaagatttgggcgtcaa 9687170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 19715907 - 19715849
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatct 59  Q
    |||||| ||||||||||||||| || ||||||||| |||||||||||||||| ||||||    
T  19715907 gattcatattgaaagatcgattgttaaatcaaagatttgggcgtcaacgttgcagatct 19715849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 3871485 - 3871534
Alignment:
Q  9 ttgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||||||||||||||||||||||||| ||||| |||||||||| |||||    
T  3871485 ttgaaagatcgattattcaatcaaagatttgggtgtcaacgttgcagatc 3871534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 14545598 - 14545643
Alignment:
Q  13 aagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||    
T  14545598 aagatcgattattcaatcaaagatttgggcgtcaacgttgcagatc 14545643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 27872808 - 27872869
Alignment:
Q  2 attcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctgaag 63  Q
    ||||| |||||| ||||||||||||||| ||||| ||| |||||||||||||||||| ||||    
T  27872808 attcaaattgaaggatcgattattcaattaaagatttgagcgtcaacgttgtagatcggaag 27872869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 35584630 - 35584573
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||||||| |||||||||| | |||||||||||||||| |||||    
T  35584630 gattcatattgaaagatcgattgttcaatcaaatatttgggcgtcaacgttgcagatc 35584573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 50148439 - 50148496
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||||||| ||||||||||||  ||||||||||||||| |||||    
T  50148439 gattcatattgaaagatcgattgttcaatcaaagatgtgggcgtcaacgttgcagatc 50148496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 20266371 - 20266427
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagat 57  Q
    |||||| ||||||||||||||| |||||||||||| |||||| ||||||||| ||||    
T  20266371 gattcatattgaaagatcgattgttcaatcaaagatttgggcatcaacgttgcagat 20266427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 30879144 - 30879200
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagat 57  Q
    |||||| ||||||||||||||| |||||||||| | |||||||||||||||| ||||    
T  30879144 gattcatattgaaagatcgattgttcaatcaaatatttgggcgtcaacgttgcagat 30879200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 45805839 - 45805783
Alignment:
Q  2 attcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||| ||||||||||||||||||||||||||||| |||  ||||||||||| |||||    
T  45805839 attccgattgaaagatcgattattcaatcaaagatttgaacgtcaacgttgcagatc 45805783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 30818353 - 30818306
Alignment:
Q  11 gaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||||||||||||||||||||||| || ||||| |||||||||||||    
T  30818353 gaaagatcgattattcaatcaaagatttaggcgttaacgttgtagatc 30818306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 40881010 - 40880963
Alignment:
Q  16 atcgattattcaatcaaagaattgggcgtcaacgttgtagatctgaag 63  Q
    |||||||||||||||||||| |||||||||||||||| ||||| ||||    
T  40881010 atcgattattcaatcaaagatttgggcgtcaacgttgcagatccgaag 40880963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 25406289 - 25406239
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||||||||||||||||||| || | ||||||||||| |||||    
T  25406289 attgaaagatcgattattcaatcaaagatttcgacgtcaacgttgcagatc 25406239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 45426078 - 45426016
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctgaag 63  Q
    |||||| || ||||||||||||||||||||||| | ||| |||||||||||| ||||| ||||    
T  45426078 gattcatatcgaaagatcgattattcaatcaaaaatttgagcgtcaacgttgcagatccgaag 45426016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 5701328 - 5701385
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||| ||||||| |||||||||||| |||||| ||||||||| |||||    
T  5701328 gattcatattgaaatatcgattgttcaatcaaagatttgggcatcaacgttgcagatc 5701385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 7997858 - 7997915
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||| ||||||| ||||| |||||| |||||||||||||||| |||||    
T  7997858 gattcatattgaaatatcgattgttcaaccaaagatttgggcgtcaacgttgcagatc 7997915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 48365777 - 48365720
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||| ||||||||||||||||||||| |||  ||||||||||| |||||    
T  48365777 gattcatattgaaggatcgattattcaatcaaagatttgaacgtcaacgttgcagatc 48365720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 18569321 - 18569265
Alignment:
Q  2 attcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||| ||||||||||||||||||||||  |||| ||||| |||||||||| |||||    
T  18569321 attcatattgaaagatcgattattcaattgaagatttgggtgtcaacgttgcagatc 18569265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 31836876 - 31836927
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttg 52  Q
    |||||| ||||||| ||||||| |||||||||||| ||| ||||||||||||    
T  31836876 gattcatattgaaaaatcgattgttcaatcaaagatttgagcgtcaacgttg 31836927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 40646757 - 40646800
Alignment:
Q  15 gatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||| |||||||||||| |||||||||||||||| |||||    
T  40646757 gatcgattgttcaatcaaagatttgggcgtcaacgttgcagatc 40646800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 51871939 - 51871989
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||||||||||||||||| | |||  ||||||||||| |||||    
T  51871939 attgaaagatcgattattcaatcaaatatttgaacgtcaacgttgcagatc 51871989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 7312117 - 7312060
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||| |||||| |||||| |||| ||||||| ||| |||||    
T  7312117 gattcatattgaaagatcgataattcaaacaaagatttggacgtcaacattgcagatc 7312060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 11454012 - 11454061
Alignment:
Q  9 ttgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||| |||||||||||||||||| ||| |||||||| ||| |||||    
T  11454012 ttgaaagagcgattattcaatcaaagatttgagcgtcaacattgcagatc 11454061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 9919465 - 9919509
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttg 52  Q
    |||||||||||||||||||||||||||| |||  |||||| ||||    
T  9919465 attgaaagatcgattattcaatcaaagatttgaacgtcaatgttg 9919509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 33291430 - 33291374
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagat 57  Q
    |||||| ||||||||||   | ||||||||||||| |||||||||||||||| ||||    
T  33291430 gattcatattgaaagataagtaattcaatcaaagatttgggcgtcaacgttgcagat 33291374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 33817193 - 33817161
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaa 33  Q
    |||||| ||||||||||||||||||||||||||    
T  33817193 gattcatattgaaagatcgattattcaatcaaa 33817161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 33876663 - 33876631
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaa 33  Q
    |||||| ||||||||||||||||||||||||||    
T  33876663 gattcatattgaaagatcgattattcaatcaaa 33876631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 34519201 - 34519232
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaa 32  Q
    |||||| |||||||||||||||||||||||||    
T  34519201 gattcatattgaaagatcgattattcaatcaa 34519232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 6e-19; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 21488153 - 21488212
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctg 60  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  21488153 gattcatattgaaaaatcgattattcaatcaaagatttgggcgtcaacgttgtagatctg 21488212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 25631531 - 25631481
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25631531 attgaaagatcgattattcaatcaaagatttgggcgtcaacgttgtagatc 25631481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 14464572 - 14464629
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  14464572 gattcatattgaaagatcgattattcaatcaaagatttgggcgtcaacgttgcagatc 14464629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 38440593 - 38440534
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctg 60  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||| ||| |||||||    
T  38440593 gattcatattgaaagatcgattattcaatcaaagatttgggcgtcaacattgcagatctg 38440534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 46178631 - 46178688
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||| || |||||||||||||||||||||||||||||||||| |||||    
T  46178631 gattcatattgaaatattgattattcaatcaaagaattgggcgtcaacgttgcagatc 46178688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 31794133 - 31794189
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagat 57  Q
    |||||| |||||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  31794133 gattcatattgaaagatcgattattcaatcaaagatttgggcatcaacgttgcagat 31794189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2342525 - 2342576
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttg 52  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||||||||||    
T  2342525 gattcatattgaaatatcgattattcaatcaaagatttgggcgtcaacgttg 2342576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 36734704 - 36734645
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctg 60  Q
    |||||| | |||||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  36734704 gattcataatgaaagatcgattattgaatcaaagatttgggcgtcaacgttgcagatctg 36734645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 3848924 - 3848874
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  3848924 attgaaagatcgattattcaatcaaagatttggacgtcaacgttgcagatc 3848874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 30648730 - 30648680
Alignment:
Q  2 attcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttg 52  Q
    ||||| |||||||||||||||||||||||||||| |||| |||||||||||    
T  30648730 attcatattgaaagatcgattattcaatcaaagatttggacgtcaacgttg 30648680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 50611423 - 50611373
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| |||||    
T  50611423 attgaaagatcgattattcaatcgaagatttgggcgtcaacgttgcagatc 50611373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12116160 - 12116217
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||||||| |||||||||||| ||| |||||||||||| |||||    
T  12116160 gattcatattgaaagatcgattgttcaatcaaagatttgagcgtcaacgttgcagatc 12116217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 17237867 - 17237924
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||| ||| |||||||||||||||||||| |||||||||||||||| |||||    
T  17237867 gattcatattaaaatatcgattattcaatcaaagatttgggcgtcaacgttgcagatc 17237924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 22803084 - 22803141
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||| |||||||||||||||| ||| |||||||||||| |||||    
T  22803084 gattcatattgaaagatcaattattcaatcaaagatttgagcgtcaacgttgcagatc 22803141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 29503535 - 29503580
Alignment:
Q  13 aagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||    
T  29503535 aagatcgattattcaatcaaagatttgggcgtcaacgttgcagatc 29503580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 32607531 - 32607588
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||| |||| |||||||||||| |||||||||||||||| |||||    
T  32607531 gattcatattgaaagattgattgttcaatcaaagatttgggcgtcaacgttgcagatc 32607588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 39917410 - 39917353
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||||||||||||| |||  ||||||||||| |||||    
T  39917410 gattcatattgaaagatcgattattcaatcaaagatttgaccgtcaacgttgcagatc 39917353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 46934704 - 46934761
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||||||||||||||||| || |||||||||||| ||| |||||    
T  46934704 gattcatattgaaagatcgattattcaatcaacgatttgggcgtcaacattgcagatc 46934761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 6910721 - 6910665
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagat 57  Q
    |||||| |||||||||||||||||||||||| ||| ||| ||||||| |||||||||    
T  6910721 gattcatattgaaagatcgattattcaatcatagatttgagcgtcaatgttgtagat 6910665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 44907410 - 44907354
Alignment:
Q  2 attcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||| ||||||||||||||| |||||||||| | |||||||||||||||| |||||    
T  44907410 attcatattgaaagatcgattgttcaatcaaatatttgggcgtcaacgttgcagatc 44907354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 49552235 - 49552179
Alignment:
Q  2 attcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||| |||||||||||||||||||||||||||| ||| || ||||||||| |||||    
T  49552235 attcacattgaaagatcgattattcaatcaaagatttgagcatcaacgttgcagatc 49552179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 25162500 - 25162555
Alignment:
Q  3 ttcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||| |||||||||||||||||||||||||||| |||  ||||||||||| |||||    
T  25162500 ttcatattgaaagatcgattattcaatcaaagatttgaccgtcaacgttgcagatc 25162555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 36906184 - 36906235
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttg 52  Q
    |||||| ||||||||||| ||| |||||||||||| ||||||||||||||||    
T  36906184 gattcatattgaaagatcaattgttcaatcaaagatttgggcgtcaacgttg 36906235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 38855041 - 38854997
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttg 52  Q
    ||||||||||||||||||||||| || | ||||||||||||||||    
T  38855041 attgaaagatcgattattcaatcgaatatttgggcgtcaacgttg 38854997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 42719579 - 42719635
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagat 57  Q
    |||||| |||||||||||||||||||||||||||| | ||  |||||||||| ||||    
T  42719579 gattcatattgaaagatcgattattcaatcaaagattcggaggtcaacgttgcagat 42719635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 35499210 - 35499167
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgt 44  Q
    |||||| ||||||||||||||| |||||||||||| ||||||||    
T  35499210 gattcatattgaaagatcgattgttcaatcaaagatttgggcgt 35499167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 51202266 - 51202215
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttg 52  Q
    |||||| |||||||||||  | ||||||||||||| ||||||||||||||||    
T  51202266 gattcatattgaaagatcagtaattcaatcaaagatttgggcgtcaacgttg 51202215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 4178634 - 4178684
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||||||||| ||||||||| |||||| |||||||||||| ||| |||||    
T  4178634 attgaaagatccattattcaaacaaagatttgggcgtcaacattgcagatc 4178684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 25849872 - 25849929
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||| |||||||||||||| ||||| ||  |||||||||||| |||||    
T  25849872 gattcatattgaaaaatcgattattcaattaaagattttagcgtcaacgttgcagatc 25849929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 58
Target Start/End: Original strand, 32701571 - 32701606
Alignment:
Q  23 attcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||| || ||||||||||||||||||||||    
T  32701571 attcaatcaatgatttgggcgtcaacgttgtagatc 32701606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 46; Significance: 1e-17; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 8756 - 8813
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  8756 gattcatattgaaagatcgattattcaatcaaagatttgggcgtcaacgttgcagatc 8813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 1e-17; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 42408427 - 42408484
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  42408427 gattcatattgaaagatcgattattcaatcaaagatttgggcgtcaacgttgcagatc 42408484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 26492430 - 26492487
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||| ||||||||||||||||||| |||||||||||||||| |||||    
T  26492430 gattcatattgaaaggtcgattattcaatcaaagatttgggcgtcaacgttgcagatc 26492487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 42311345 - 42311402
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  42311345 gattcatattgaaagatcgattattcaatcaaagatttggccgtcaacgttgcagatc 42311402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 14627891 - 14627835
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagat 57  Q
    |||||| |||||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  14627891 gattcatattgaaagatcgattattcaatcaaagatttgagcgtcaacgttgcagat 14627835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 32684733 - 32684792
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctg 60  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||||||||  |||||||    
T  32684733 gattcatattgaaatatcgattattcaatcaaagatttgggcgtcaacgttacagatctg 32684792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 6002086 - 6002148
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctgaag 63  Q
    |||||| ||||||||||| |||||||||||||||| ||| |||||||||||| ||||| ||||    
T  6002086 gattcatattgaaagatcaattattcaatcaaagatttgagcgtcaacgttgcagatccgaag 6002148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 17223012 - 17222950
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctgaag 63  Q
    |||||| |||||||||||||||||||||||||||| ||||  |||||||||| |||| |||||    
T  17223012 gattcatattgaaagatcgattattcaatcaaagatttggatgtcaacgttgcagatttgaag 17222950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 22927875 - 22927825
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  22927875 attgaaagatcgattattcaatcaaagatttggacgtcaacgttgcagatc 22927825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 23085587 - 23085645
Alignment:
Q  2 attcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctg 60  Q
    ||||| |||||||||||||||||||||||||||| |||  ||||||||||| |||||||    
T  23085587 attcatattgaaagatcgattattcaatcaaagatttgaacgtcaacgttgcagatctg 23085645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 35496180 - 35496130
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| |||||    
T  35496180 attgaaagatcgattattcaatcgaagatttgggcgtcaacgttgcagatc 35496130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 6558950 - 6558999
Alignment:
Q  9 ttgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||||| |||||||||||||||| |||||    
T  6558950 ttgaaaaatcgattattcaatcaaagatttgggcgtcaacgttgcagatc 6558999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 34773776 - 34773833
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||||||  |||||||||||| |||||||||||||||| |||||    
T  34773776 gattcatattgaaagatcgatcgttcaatcaaagatttgggcgtcaacgttgcagatc 34773833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 42067062 - 42067017
Alignment:
Q  13 aagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||    
T  42067062 aagatcgattattcaatcaaagatttgggcgtcaacgttgcagatc 42067017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 46822080 - 46822137
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||| ||||||||||| |||||||||||| |||||||||||||||| |||||    
T  46822080 gattcatattaaaagatcgattgttcaatcaaagatttgggcgtcaacgttgcagatc 46822137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 46339119 - 46339175
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagat 57  Q
    |||||| ||||||||||| ||| |||||||||||| |||||||||||||||| ||||    
T  46339119 gattcatattgaaagatctattgttcaatcaaagatttgggcgtcaacgttgcagat 46339175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 20116647 - 20116698
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttg 52  Q
    |||||| ||||||||||||||||||||||||||   ||||||||||||||||    
T  20116647 gattcatattgaaagatcgattattcaatcaaaactttgggcgtcaacgttg 20116698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 433696 - 433646
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||| |||||    
T  433696 attgaaagatcgattattcaatcaaagatttggacgttaacgttgcagatc 433646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 13592513 - 13592463
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||| ||||||||||||||||||||||| ||| |||||||||||| |||||    
T  13592513 attggaagatcgattattcaatcaaagatttgagcgtcaacgttgcagatc 13592463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 1448842 - 1448785
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||| |||||||||||||||| ||||  |||||||||| |||||    
T  1448842 gattcatattgaaagatccattattcaatcaaagatttggatgtcaacgttgcagatc 1448785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 2843253 - 2843196
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||||||| |||||||||||| ||| ||||||| |||| |||||    
T  2843253 gattcatattgaaagatcgattgttcaatcaaagatttgagcgtcaatgttgcagatc 2843196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 19560063 - 19560120
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||| ||||||||||||||||| |||| ||||||| ||| |||||    
T  19560063 gattcatattgaaagattgattattcaatcaaagatttggacgtcaaccttgcagatc 19560120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 45199033 - 45198988
Alignment:
Q  13 aagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||||| ||||||||||||||| |||||||||||||||| |||||    
T  45199033 aagatcggttattcaatcaaagatttgggcgtcaacgttgcagatc 45198988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 35667244 - 35667188
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagat 57  Q
    |||||| ||||||||||||||||||||||||| || ||| ||||||| |||| ||||    
T  35667244 gattcatattgaaagatcgattattcaatcaacgatttgagcgtcaatgttgcagat 35667188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 7640779 - 7640740
Alignment:
Q  9 ttgaaagatcgattattcaatcaaagaattgggcgtcaac 48  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  7640779 ttgaaagatcgattattcaatcaaatatttgggcgtcaac 7640740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 20083411 - 20083453
Alignment:
Q  9 ttgaaagatcgattattcaatcaaagaattgggcgtcaacgttg 52  Q
    |||||||||||||| |||||||||||| ||||||||||||||||    
T  20083411 ttgaaagatcgatt-ttcaatcaaagatttgggcgtcaacgttg 20083453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 1485262 - 1485212
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||||| |||||||||||||||||||| |||| ||||||| ||| |||||    
T  1485262 attgaaaaatcgattattcaatcaaagatttggacgtcaacattgcagatc 1485212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 23786640 - 23786674
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaaga 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  23786640 gattcatattgaaagatcgattattcaatcaaaga 23786674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 26583779 - 26583813
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaaga 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  26583779 gattcatattgaaagatcgattattcaatcaaaga 26583813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 21266467 - 21266512
Alignment:
Q  13 aagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||||||||||||||||||||| ||| || ||||||||| |||||    
T  21266467 aagatcgattattcaatcaaagatttgagcatcaacgttgcagatc 21266512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 35261363 - 35261420
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||| |||||||||||||||||||||||| || | |||||| |||| |||||    
T  35261363 gattcatattaaaagatcgattattcaatcaaagatttagacgtcaatgttgcagatc 35261420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 48207977 - 48208022
Alignment:
Q  13 aagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||| |||||||||| |||||||||||||||| |||||    
T  48207977 aagatccattatacaatcaaagatttgggcgtcaacgttgcagatc 48208022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 17611190 - 17611234
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtc 45  Q
    |||||| |||||||||| ||||||||||||||||| ||| |||||    
T  17611190 gattcatattgaaagattgattattcaatcaaagatttgagcgtc 17611234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 31235804 - 31235753
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttg 52  Q
    |||||| ||||||||||| ||||||||||||||   ||| ||||||||||||    
T  31235804 gattcatattgaaagatcaattattcaatcaaatctttgagcgtcaacgttg 31235753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 32521939 - 32521888
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttg 52  Q
    |||||| ||||||||||| |||||||||||||||| || ||| |||| ||||    
T  32521939 gattcatattgaaagatcaattattcaatcaaagatttaggcatcaatgttg 32521888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 1e-17; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 19259824 - 19259767
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  19259824 gattcatattgaaagatcgattattcaatcaaagatttgggcgtcaacgttgcagatc 19259767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 41184452 - 41184395
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  41184452 gattcatattgaaagatcgattattcaatcaaagatttgggcgtcaacgttgcagatc 41184395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 2057850 - 2057793
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||||||||||||| ||| |||||||||||| |||||    
T  2057850 gattcatattgaaagatcgattattcaatcaaagatttgagcgtcaacgttgcagatc 2057793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 16981357 - 16981414
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||||||||||||| |||||||||| ||||| |||||    
T  16981357 gattcatattgaaagatcgattattcaatcaaagatttgggcgtcatcgttgcagatc 16981414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 34881785 - 34881842
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||| |||||||||||||||| |||||||||||||||| |||||    
T  34881785 gattcatattgaaagatcaattattcaatcaaagatttgggcgtcaacgttgcagatc 34881842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 42579956 - 42580012
Alignment:
Q  2 attcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||| ||| |||||||||||||||||||||||| |||||||||||||||| |||||    
T  42579956 attcatatttaaagatcgattattcaatcaaagatttgggcgtcaacgttgcagatc 42580012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 19280950 - 19280900
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  19280950 attgaaagatcgattattcaatcaaagatttggacgtcaacgttgcagatc 19280900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 4954066 - 4954115
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagat 57  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| ||||    
T  4954066 attgaaagatcgattattcaatcaaagatttggacgtcaacgttgcagat 4954115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 20257707 - 20257650
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||  |||||||||||||||||||| ||| ||||||||||||||||||    
T  20257707 gattcatattgaagtatcgattattcaatcaaagatttgcgcgtcaacgttgtagatc 20257650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 21060283 - 21060238
Alignment:
Q  13 aagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||    
T  21060283 aagatcgattattcaatcaaagatttgggcgtcaacgttgcagatc 21060238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 26578319 - 26578376
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||||||| |||||||||||| ||||||||||| |||| |||||    
T  26578319 gattcatattgaaagatcgattgttcaatcaaagatttgggcgtcaatgttgcagatc 26578376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 27266871 - 27266814
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||||||||||||| |||  ||||||||||| |||||    
T  27266871 gattcatattgaaagatcgattattcaatcaaagatttgaccgtcaacgttgcagatc 27266814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 35475339 - 35475294
Alignment:
Q  12 aaagatcgattattcaatcaaagaattgggcgtcaacgttgtagat 57  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||    
T  35475339 aaagatcgattattcaatcaaagatttgggcgtcaacgttgcagat 35475294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 27576355 - 27576311
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttg 52  Q
    |||||||||||||||||||||||||||| |||||| |||||||||    
T  27576355 attgaaagatcgattattcaatcaaagatttgggcatcaacgttg 27576311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 30298286 - 30298333
Alignment:
Q  13 aagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctg 60  Q
    ||||| ||||||||||||||||| |||||||||||||||| |||||||    
T  30298286 aagattgattattcaatcaaagatttgggcgtcaacgttgcagatctg 30298333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 7150340 - 7150290
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||||||||| |||||||||||||||| |||| ||||||||||| |||||    
T  7150340 attgaaagatcaattattcaatcaaagatttggacgtcaacgttgcagatc 7150290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 11768070 - 11768120
Alignment:
Q  2 attcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttg 52  Q
    ||||| |||||||||||||||||||||||||||| ||| ||||||| ||||    
T  11768070 attcatattgaaagatcgattattcaatcaaagatttgagcgtcaatgttg 11768120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 43261831 - 43261769
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctgaag 63  Q
    |||||| ||||||| |||||||||||||||||||| ||||| ||||| |||| ||||| ||||    
T  43261831 gattcatattgaaaaatcgattattcaatcaaagatttgggagtcaaagttgcagatccgaag 43261769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 3271414 - 3271357
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||| |||||| ||||||||| |||| ||||||||||| |||||    
T  3271414 gattcatattgaaagatccattatttaatcaaagatttggacgtcaacgttgcagatc 3271357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 18677477 - 18677420
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||| ||||||| |||| ||||||||| ||| |||||    
T  18677477 gattcatattgaaagatcgattatttaatcaaataatttggcgtcaacattgcagatc 18677420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 30371794 - 30371849
Alignment:
Q  2 attcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagat 57  Q
    ||||| ||||||||||||||| |||||||||||| |||| ||||||| ||| ||||    
T  30371794 attcatattgaaagatcgattgttcaatcaaagatttggacgtcaacattgcagat 30371849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 42886545 - 42886606
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctgaag 63  Q
    |||||| ||| ||||||||||||||||||||||| ||| | ||||||||||| ||||| ||||    
T  42886545 gattcatattaaaagatcgattattcaatcaaag-atttgacgtcaacgttgcagatccgaag 42886606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 7886950 - 7886893
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||| |||||||||||||||||||||||| || ||| | ||||||| |||||    
T  7886950 gattcatattaaaagatcgattattcaatcaaagattttggcattaacgttgcagatc 7886893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 58
Target Start/End: Original strand, 10722841 - 10722876
Alignment:
Q  23 attcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||| || ||||||||||||||||||||||    
T  10722841 attcaatcaatgatttgggcgtcaacgttgtagatc 10722876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 1e-17; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 3269123 - 3269066
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  3269123 gattcatattgaaagatcgattattcaatcaaagatttgggcgtcaacgttgcagatc 3269066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 3269682 - 3269625
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  3269682 gattcatattgaaagatcgattattcaatcaaagatttgggcgtcaacgttgcagatc 3269625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 3270241 - 3270184
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  3270241 gattcatattgaaagatcgattattcaatcaaagatttgggcgtcaacgttgcagatc 3270184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 3725249 - 3725306
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  3725249 gattcatattgaaagatcgattattcaatcaaagatttgagcgtcaacgttgtagatc 3725306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 8308239 - 8308296
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  8308239 gattcatattgaaagatcgattattcaatcaaagaattggacgtcaacgttgcagatc 8308296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 34599056 - 34599107
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttg 52  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  34599056 gattcatattgaaagatcgattattcaatcaaagatttgggcgtcaacgttg 34599107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 2808484 - 2808427
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||||||||||||| || ||||||||||||| |||||    
T  2808484 gattcatattgaaagatcgattattcaatcaaagattttggcgtcaacgttgcagatc 2808427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 6173701 - 6173758
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||| ||||||||||||| |||||||||||||||| |||||    
T  6173701 gattcatattgaaagatcgatcattcaatcaaagatttgggcgtcaacgttgcagatc 6173758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 7015723 - 7015666
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||||||||| |||||    
T  7015723 gattcatattgaaatatcgattattcaatcaaagatttgggcgtcaacgttgcagatc 7015666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 36234077 - 36234134
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||||||| |||||||||||| |||||||||||||||| |||||    
T  36234077 gattcatattgaaagatcgattgttcaatcaaagatttgggcgtcaacgttgcagatc 36234134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 8805935 - 8805991
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagat 57  Q
    |||||| |||||||||||||||||||||||||||| || ||||||||||||| ||||    
T  8805935 gattcatattgaaagatcgattattcaatcaaagattttggcgtcaacgttgcagat 8805991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 9986354 - 9986298
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagat 57  Q
    |||||| |||||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  9986354 gattcatattgaaagatcgattattcaattaaagatttgggcgtcaacgttgcagat 9986298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 40659935 - 40659887
Alignment:
Q  10 tgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||    
T  40659935 tgaaagatcgattattcaatcaaagatttgggcgtcaacgttggagatc 40659887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 32679115 - 32679065
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  32679115 attgaaagatcgattattcaatcaaagatttggacgtcaacgttgcagatc 32679065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 459286 - 459229
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||| ||||||||| || ||||||||||||| |||||    
T  459286 gattcatattgaaagatcgattatttaatcaaagatttaggcgtcaacgttgcagatc 459229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 27249163 - 27249106
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||||||| |||||||||||| |||||||||| ||||| |||||    
T  27249163 gattcatattgaaagatcgattgttcaatcaaagatttgggcgtcagcgttgcagatc 27249106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 27949495 - 27949552
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| || |||||||| |||||||||||||||| |||||||||||||||| |||||    
T  27949495 gattcatatcgaaagatcaattattcaatcaaagatttgggcgtcaacgttgcagatc 27949552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 30420747 - 30420804
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||| |||| |||||||||||| |||||||||||||||| |||||    
T  30420747 gattcatattgaaagatagattgttcaatcaaagatttgggcgtcaacgttgcagatc 30420804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 32913321 - 32913366
Alignment:
Q  13 aagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||    
T  32913321 aagatcgattattcaatcaaagatttgggcgtcaacgttgcagatc 32913366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 40626069 - 40626012
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||||||||||||| |||  ||||||||||| |||||    
T  40626069 gattcatattgaaagatcgattattcaatcaaagatttgatcgtcaacgttgcagatc 40626012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 22421811 - 22421854
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgtt 51  Q
    ||||||||||||||||||||||||| || |||||||||||||||    
T  22421811 attgaaagatcgattattcaatcaatgatttgggcgtcaacgtt 22421854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 20047087 - 20047037
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||||||||||||||||||| |||| | ||||||||| |||||    
T  20047087 attgaaagatcgattattcaatcaaagatttggacatcaacgttgcagatc 20047037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 27477229 - 27477279
Alignment:
Q  13 aagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctgaag 63  Q
    ||||||||||||||||||||||| |||||| ||||||||| ||||| ||||    
T  27477229 aagatcgattattcaatcaaagatttgggcatcaacgttgcagatcggaag 27477279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 41431104 - 41431154
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||||||||||||||||||| ||||  |||||||||| |||||    
T  41431104 attgaaagatcgattattcaatcaaagatttggatgtcaacgttgcagatc 41431154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 84192 - 84136
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||| |||||||||||||||||||| |||| ||||||||||| |||||    
T  84192 gattcatattgaaa-atcgattattcaatcaaagatttggacgtcaacgttgcagatc 84136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 21570408 - 21570363
Alignment:
Q  13 aagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||||||||||||||||||||| ||||||||||| |||| |||||    
T  21570408 aagatcgattattcaatcaaagatttgggcgtcaatgttgcagatc 21570363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 25087107 - 25087162
Alignment:
Q  2 attcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagat 57  Q
    ||||| ||| ||||||||||||||||||||| || |||| ||||||||||| ||||    
T  25087107 attcatattaaaagatcgattattcaatcaatgatttggacgtcaacgttgcagat 25087162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 38575481 - 38575440
Alignment:
Q  17 tcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||| |||||||||||||||| |||||    
T  38575481 tcgattgttcaatcaaagatttgggcgtcaacgttgcagatc 38575440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 39641869 - 39641813
Alignment:
Q  2 attcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||| ||||||||||| ||||||||||| || | |||||| ||||||||| |||||    
T  39641869 attcatattgaaagatcaattattcaatccaaaatttgggcatcaacgttgcagatc 39641813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 58
Target Start/End: Complemental strand, 33229130 - 33229095
Alignment:
Q  23 attcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||||||||||| |||||||||||||||| |||||    
T  33229130 attcaatcaaagatttgggcgtcaacgttgcagatc 33229095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 1e-16; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12653009 - 12653068
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctg 60  Q
    |||||| |||||||||||||||||||||||||||| |||| ||||||||||| |||||||    
T  12653009 gattcatattgaaagatcgattattcaatcaaagatttggccgtcaacgttgcagatctg 12653068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 7881114 - 7881057
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||||||| |||||||||||| |||||||||||||||| |||||    
T  7881114 gattcatattgaaagatcgattgttcaatcaaagatttgggcgtcaacgttgcagatc 7881057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 4984579 - 4984523
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagat 57  Q
    |||||| |||||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  4984579 gattcatattgaaagatcgattattcaatcaaagatttgggcatcaacgttgcagat 4984523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 8196409 - 8196362
Alignment:
Q  11 gaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||    
T  8196409 gaaagatcgattattcaatcaacgatttgggcgtcaacgttgtagatc 8196362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 7876056 - 7875999
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||| ||||||||||| |||||||||||| |||||||||||||||| |||||    
T  7876056 gattcatattaaaagatcgattgttcaatcaaagatttgggcgtcaacgttgcagatc 7875999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 8497032 - 8497089
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||||||| |||||||||||| ||||||| |||||||| |||||    
T  8497032 gattcatattgaaagatcgattcttcaatcaaagatttgggcggcaacgttgcagatc 8497089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 25064301 - 25064358
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||||||| |||||||||||| ||| |||||||||||| |||||    
T  25064301 gattcatattgaaagatcgattgttcaatcaaagatttgagcgtcaacgttgcagatc 25064358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 33110676 - 33110733
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||| |||||||||||||||||||||||| || ||||||||||||| |||||    
T  33110676 gattcatattaaaagatcgattattcaatcaaagattttggcgtcaacgttgcagatc 33110733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 12165905 - 12165961
Alignment:
Q  2 attcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||| |||||||||| |||||||||||| |||| |||||||||||||||| |||||    
T  12165905 attcatattgaaagattgattattcaatcgaagatttgggcgtcaacgttgcagatc 12165961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 16419224 - 16419280
Alignment:
Q  2 attcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||| ||||||| |||||||||||||||||||| |||| ||||||||||| |||||    
T  16419224 attcatattgaaaaatcgattattcaatcaaagatttggacgtcaacgttgcagatc 16419280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 4088535 - 4088582
Alignment:
Q  11 gaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||| |||||||||||| |||||||||||||||| |||||    
T  4088535 gaaagatcgattgttcaatcaaagatttgggcgtcaacgttgcagatc 4088582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 35001662 - 35001717
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctgaag 63  Q
    ||||||||||| |||||||||||||||| |||| ||||||||||| ||||| ||||    
T  35001662 attgaaagatcaattattcaatcaaagatttggacgtcaacgttgcagatccgaag 35001717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 4468630 - 4468680
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||||||||||||| |||| ||||||||||| |||||    
T  4468630 attgaaggatcgattattcaatcaaagatttggccgtcaacgttgcagatc 4468680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 10228751 - 10228801
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||| |||||    
T  10228751 attgaaagattgattattcaatcaaagatttggacgtcaacgttgcagatc 10228801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 33740583 - 33740533
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||||||||||||||||||||| |||| ||| |||||||||||| |||||    
T  33740583 attgaaagatcgattattcaatcgaagatttgagcgtcaacgttgcagatc 33740533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 17237286 - 17237241
Alignment:
Q  13 aagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||||||||||||||||||||| ||||| |||||||||| |||||    
T  17237286 aagatcgattattcaatcaaagatttgggtgtcaacgttgcagatc 17237241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 4352007 - 4351961
Alignment:
Q  2 attcagattgaaagatcgattattcaatcaaagaattgggcgtcaac 48  Q
    ||||| |||||||||||||||||| ||||||||| |||| |||||||    
T  4352007 attcatattgaaagatcgattatttaatcaaagatttggacgtcaac 4351961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 8028130 - 8028068
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctgaag 63  Q
    |||||| ||| |||||||| ||||||||||||||| |||||||| ||| ||| ||||| ||||    
T  8028130 gattcatattaaaagatcggttattcaatcaaagatttgggcgttaacattgcagatccgaag 8028068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 23947330 - 23947273
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||| || ||||||| || ||||||||||| |||| |||||    
T  23947330 gattcatattgaaagatcgataatccaatcaacgatttgggcgtcaatgttgcagatc 23947273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 28635133 - 28635076
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||  |||||||||||||||| ||| ||||||| |||| |||||    
T  28635133 gattcatattgaaagattaattattcaatcaaagatttgagcgtcaatgttgcagatc 28635076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 33543633 - 33543577
Alignment:
Q  2 attcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||| ||||||||||||| |||||||||||| | ||||| ||||| |||| |||||    
T  33543633 attcatattgaaagatcgactattcaatcaaaaatttgggtgtcaatgttgcagatc 33543577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 6e-16; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 42448039 - 42447977
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctgaag 63  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||||||||| ||||| ||||    
T  42448039 gattcatattgaaatatcgattattcaatcaaagatttgggcgtcaacgttgcagatccgaag 42447977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11464243 - 11464300
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||||||| |||||||||||| |||||||||||||||| |||||    
T  11464243 gattcatattgaaagatcgattgttcaatcaaagatttgggcgtcaacgttgcagatc 11464300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 27747125 - 27747068
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||| |||||||||||||||| |||||| |||||||||||||||    
T  27747125 gattcatattgaaagatcaattattcaatcaaagatttgggcatcaacgttgtagatc 27747068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 32724493 - 32724436
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||||||||| |||||    
T  32724493 gattcatattgaaatatcgattattcaatcaaagatttgggcgtcaacgttgcagatc 32724436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 33896161 - 33896211
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  33896161 attgaaagatcgattattcaatcaaagatttggacgtcaacgttgcagatc 33896211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 4809036 - 4809093
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||||||| ||||||||| || |||||||||||||||| |||||    
T  4809036 gattcatattgaaagatcgattgttcaatcaaggatttgggcgtcaacgttgcagatc 4809093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 17949308 - 17949357
Alignment:
Q  2 attcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgtt 51  Q
    ||||| |||||||||||||||||||||||| ||| |||||||||||||||    
T  17949308 attcatattgaaagatcgattattcaatcagagatttgggcgtcaacgtt 17949357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 23851506 - 23851449
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||||||| |||||||||||| |||| ||||||||||| |||||    
T  23851506 gattcatattgaaagatcgattgttcaatcaaagatttggacgtcaacgttgcagatc 23851449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 43890128 - 43890079
Alignment:
Q  9 ttgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||||| |||||||||||| |||||||||||||||| |||||    
T  43890128 ttgaaagatcgattgttcaatcaaagatttgggcgtcaacgttgcagatc 43890079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 44099946 - 44099889
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||| |||||||||||||||| |||||||| ||||||| |||||    
T  44099946 gattcatattgaaagatcaattattcaatcaaagagttgggcgtgaacgttgcagatc 44099889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 9498611 - 9498549
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctgaag 63  Q
    |||||| ||| ||||||||||| |||||||||||| |||| || |||||||||||||| ||||    
T  9498611 gattcatattaaaagatcgattgttcaatcaaagatttggacgacaacgttgtagatccgaag 9498549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 28239912 - 28239962
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||||||||| |||||||||||||||| ||| |||||||||||| |||||    
T  28239912 attgaaagatcaattattcaatcaaagatttgagcgtcaacgttgcagatc 28239962  T

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Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 29777298 - 29777348
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||||||||||||||||||| |||| ||||||| ||| |||||    
T  29777298 attgaaagatcgattattcaatcaaagatttggacgtcaacattgcagatc 29777348  T

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Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 43135579 - 43135541
Alignment:
Q  13 aagatcgattattcaatcaaagaattgggcgtcaacgtt 51  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  43135579 aagatcgattattcaatcaaagatttgggcgtcaacgtt 43135541  T

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Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 2655942 - 2655991
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgt 50  Q
    |||||| ||||||||||||||| |||||||||||| ||||| ||||||||    
T  2655942 gattcatattgaaagatcgattgttcaatcaaagatttgggtgtcaacgt 2655991  T

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Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 9072797 - 9072846
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagat 57  Q
    |||||||||||||||||||||||||||| ||||  |||||||||| ||||    
T  9072797 attgaaagatcgattattcaatcaaagatttggatgtcaacgttgcagat 9072846  T

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Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 9619369 - 9619312
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||||||||||||||| || ||||||||| |||||||||||| ||| |||||    
T  9619369 gattcatattgaaagatcgattgttaaatcaaagatttgggcgtcaactttgcagatc 9619312  T

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Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 11196972 - 11197017
Alignment:
Q  13 aagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||||||||||| || |||||||||||||||| |||||    
T  11196972 aagatcgattattcaatcaacgatttgggcgtcaacgttgcagatc 11197017  T

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Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 11725764 - 11725809
Alignment:
Q  13 aagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||||||||||||||| ||||| |||||||||||||||| |||||    
T  11725764 aagatcgattattcaattaaagatttgggcgtcaacgttgcagatc 11725809  T

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Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 16794364 - 16794415
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttg 52  Q
    |||||| ||||||||||| ||||||||||||||||||||  | |||||||||    
T  16794364 gattcatattgaaagatcaattattcaatcaaagaattgaacatcaacgttg 16794415  T

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Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 14906924 - 14906879
Alignment:
Q  12 aaagatcgattattcaatcaaagaattgggcgtcaacgttgtagat 57  Q
    ||||||||||| ||||||||| || |||||||||||||||| ||||    
T  14906924 aaagatcgattgttcaatcaatgatttgggcgtcaacgttgcagat 14906879  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 15597179 - 15597122
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||| || ||||| |||||||||| |||| ||| ||||||||||||||||||    
T  15597179 gattcatattaaacgatcggttattcaatcgaagatttgagcgtcaacgttgtagatc 15597122  T

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Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 19876294 - 19876339
Alignment:
Q  13 aagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||||||||||||||||||||| |||||| | ||||||| |||||    
T  19876294 aagatcgattattcaatcaaagatttgggcctgaacgttgcagatc 19876339  T

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Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 43192350 - 43192301
Alignment:
Q  9 ttgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||||||||||| |||||| | ||||| |||||||||| |||||    
T  43192350 ttgaaagatcgattattcgatcaaatatttgggtgtcaacgttgcagatc 43192301  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 34611876 - 34611932
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagat 57  Q
    |||||| ||||||||||   | ||||||||||||| |||||||||||||||| ||||    
T  34611876 gattcatattgaaagataagtaattcaatcaaagatttgggcgtcaacgttgcagat 34611932  T

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Target: chr8; HSP #26
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 33342520 - 33342566
Alignment:
Q  13 aagatcgattattcaatcaaagaattgggcgtcaacgttgtagatctg 60  Q
    |||||| ||||||||||||||||||||| |||| |||||| |||||||    
T  33342520 aagatcaattattcaatcaaagaattggacgtc-acgttgcagatctg 33342566  T

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Target: scaffold0014 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 201373 - 201328
Alignment:
Q  13 aagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  201373 aagatcgattattcaatcaaagatttgggcgtcaacgttgtagatc 201328  T

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Target: scaffold0426 (Bit Score: 38; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 6370 - 6427
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| |||||||||||||||||||||||||| | |||||| ||||||||| |||||    
T  6370 gattcatattgaaagatcgattattcaatcaaatatttgggcatcaacgttgcagatc 6427  T

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Target: scaffold0146 (Bit Score: 38; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 16332 - 16275
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||| ||| ||| |||||||||||||||||||| |||||||||||||||| |||||    
T  16332 gattcatattaaaatatcgattattcaatcaaagatttgggcgtcaacgttgcagatc 16275  T

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Target: scaffold0022 (Bit Score: 37; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 83450 - 83394
Alignment:
Q  1 gattcagattgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagat 57  Q
    |||||| ||||||||||||||||||||||| |||| |||| ||||||||||| ||||    
T  83450 gattcatattgaaagatcgattattcaatcgaagatttggccgtcaacgttgcagat 83394  T

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Target: scaffold0495 (Bit Score: 35; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 5470 - 5520
Alignment:
Q  8 attgaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||| |||||    
T  5470 attgaaagattgattattcaatcaaagatttggacgtcaacgttgcagatc 5520  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 361801 - 361754
Alignment:
Q  11 gaaagatcgattattcaatcaaagaattgggcgtcaacgttgtagatc 58  Q
    |||||||  |||||||||||||||| |||| |||||||||||||||||    
T  361801 gaaagattaattattcaatcaaagatttggacgtcaacgttgtagatc 361754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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