View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5798-27 (Length: 71)
Name: Solexa-NF5798-27
Description: NF5798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5798-27 |
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| [»] chr1 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 64; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 48584499 - 48584562
Alignment:
| Q |
8 |
gttaacattattaattaatgatgcatgtttcttaatgtcttccataaactcatcaagattccga |
71 |
Q |
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| T |
48584499 |
gttaacattattaattaatgatgcatgtttcttaatgtcttccataaactcatcaagattccga |
48584562 |
T |
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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 11546415 - 11546451
Alignment:
| Q |
35 |
tttcttaatgtcttccataaactcatcaagattccga |
71 |
Q |
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| T |
11546415 |
tttcttaatgtcttccaaaaattcatcaagattccga |
11546451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 48619150 - 48619115
Alignment:
| Q |
36 |
ttcttaatgtcttccataaactcatcaagattccga |
71 |
Q |
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| T |
48619150 |
ttctgaatgtcttccataaattcatcaagattccga |
48619115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 19666506 - 19666471
Alignment:
| Q |
36 |
ttcttaatgtcttccataaactcatcaagattccga |
71 |
Q |
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| T |
19666506 |
ttcttaatgtcttccataaattcatcaagattccga |
19666471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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