View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5798-4 (Length: 151)

Name: Solexa-NF5798-4
Description: NF5798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5798-4
Solexa-NF5798-4
[»] chr4 (16 HSPs)
chr4 (8-118)||(2625556-2625666)
chr4 (30-85)||(2367993-2368048)
chr4 (44-85)||(5106644-5106685)
chr4 (46-86)||(2391348-2391388)
chr4 (40-72)||(2621506-2621538)
chr4 (38-85)||(2363165-2363212)
chr4 (30-85)||(12124508-12124563)
chr4 (44-85)||(2490805-2490846)
chr4 (44-85)||(2518910-2518951)
chr4 (44-85)||(2533990-2534031)
chr4 (46-83)||(5035301-5035338)
chr4 (37-85)||(2460276-2460324)
chr4 (37-85)||(2471726-2471774)
chr4 (46-85)||(2373559-2373598)
chr4 (44-83)||(2467219-2467258)
chr4 (44-83)||(2547221-2547260)


Alignment Details
Target: chr4 (Bit Score: 107; Significance: 5e-54; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 5e-54
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 2625666 - 2625556
Alignment:
Q  8 aatcagagaccatagccgaatcgggataagtgaggttgagttcttcgagtaaagggaaacaatcaacaataaagaagattttagtcctgcacataagatt 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2625666 aatcaaagaccatagccgaatcgggataagtgaggttgagttcttcgagtaaagggaaacaatcaacaataaagaagattttagtcctgcacataagatt 2625567  T
Q  108 cattcggtaaa 118  Q
    |||||||||||    
T  2625566 cattcggtaaa 2625556  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 2368048 - 2367993
Alignment:
Q  30 gggataagtgaggttgagttcttcgagtaaagggaaacaatcaacaataaagaaga 85  Q
    ||||||| ||| || |||||||||||||||||||||||||||| |||| |||||||    
T  2368048 gggataactgatgtcgagttcttcgagtaaagggaaacaatcagcaatgaagaaga 2367993  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 5106685 - 5106644
Alignment:
Q  44 tgagttcttcgagtaaagggaaacaatcaacaataaagaaga 85  Q
    ||||||||||||||||||||||||||||| |||| |||||||    
T  5106685 tgagttcttcgagtaaagggaaacaatcagcaatgaagaaga 5106644  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 2391388 - 2391348
Alignment:
Q  46 agttcttcgagtaaagggaaacaatcaacaataaagaagat 86  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  2391388 agttcttcgagtaaagggaagcaatcaacaatgaagaagat 2391348  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 2621538 - 2621506
Alignment:
Q  40 aggttgagttcttcgagtaaagggaaacaatca 72  Q
    |||||||||||||||||||||||||||||||||    
T  2621538 aggttgagttcttcgagtaaagggaaacaatca 2621506  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 2363212 - 2363165
Alignment:
Q  38 tgaggttgagttcttcgagtaaagggaaacaatcaacaataaagaaga 85  Q
    ||||||||||||| ||||| ||||||||||||||| |||| |||||||    
T  2363212 tgaggttgagttcgtcgaggaaagggaaacaatcagcaatgaagaaga 2363165  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 12124508 - 12124563
Alignment:
Q  30 gggataagtgaggttgagttcttcgagtaaagggaaacaatcaacaataaagaaga 85  Q
    ||||||| ||||||  |||||||| |||||||||||||||||| |||| |||||||    
T  12124508 gggataactgaggtcaagttcttctagtaaagggaaacaatcagcaatgaagaaga 12124563  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 2490805 - 2490846
Alignment:
Q  44 tgagttcttcgagtaaagggaaacaatcaacaataaagaaga 85  Q
    ||||||| ||||||||||||||||||||| ||||||| ||||    
T  2490805 tgagttcgtcgagtaaagggaaacaatcagcaataaaaaaga 2490846  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 2518910 - 2518951
Alignment:
Q  44 tgagttcttcgagtaaagggaaacaatcaacaataaagaaga 85  Q
    ||||||||| ||||||||||||||||||| |||| |||||||    
T  2518910 tgagttctttgagtaaagggaaacaatcagcaatgaagaaga 2518951  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 2533990 - 2534031
Alignment:
Q  44 tgagttcttcgagtaaagggaaacaatcaacaataaagaaga 85  Q
    |||||||||| |||||||||||||||||| |||| |||||||    
T  2533990 tgagttcttcaagtaaagggaaacaatcagcaatcaagaaga 2534031  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 5035301 - 5035338
Alignment:
Q  46 agttcttcgagtaaagggaaacaatcaacaataaagaa 83  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  5035301 agttcttcgagtaaagggaaacaatcagcaatcaagaa 5035338  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 2460276 - 2460324
Alignment:
Q  37 gtgaggttgagttcttcgagtaaagggaaacaatcaacaataaagaaga 85  Q
    |||||| |||||||||||||||| || ||||||||| |||| |||||||    
T  2460276 gtgaggatgagttcttcgagtaatggaaaacaatcagcaattaagaaga 2460324  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 2471726 - 2471774
Alignment:
Q  37 gtgaggttgagttcttcgagtaaagggaaacaatcaacaataaagaaga 85  Q
    |||||| ||||||||||||||||||| ||||||||| | || |||||||    
T  2471726 gtgagggtgagttcttcgagtaaaggaaaacaatcagctatcaagaaga 2471774  T

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Target: chr4; HSP #14
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 2373598 - 2373559
Alignment:
Q  46 agttcttcgagtaaagggaaacaatcaacaataaagaaga 85  Q
    ||||||||||| ||||||||||||||| |||| |||||||    
T  2373598 agttcttcgagcaaagggaaacaatcagcaatgaagaaga 2373559  T

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Target: chr4; HSP #15
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 2467219 - 2467258
Alignment:
Q  44 tgagttcttcgagtaaagggaaacaatcaacaataaagaa 83  Q
    |||| |||||||||||||||||||||||| |||| |||||    
T  2467219 tgagctcttcgagtaaagggaaacaatcagcaatgaagaa 2467258  T

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Target: chr4; HSP #16
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 2547221 - 2547260
Alignment:
Q  44 tgagttcttcgagtaaagggaaacaatcaacaataaagaa 83  Q
    |||||||||| |||||||||||||||||| |||| |||||    
T  2547221 tgagttcttcaagtaaagggaaacaatcagcaatgaagaa 2547260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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