View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5799-1 (Length: 265)
Name: Solexa-NF5799-1
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5799-1 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-121
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 30360814 - 30360563
Alignment:
| Q |
12 |
aaccccttacacaggttcaagagtttgatttacatttgaatcatcgagccgtggatagagcacaatttgatcagaaggtaatgaaatcagtccgtctttg |
111 |
Q |
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| T |
30360814 |
aaccccttacacaggttcaagagtttgatttacatttgaatcatcgggccgtggatagagcacaatttgatcagaaggtaatgacatcagtccgtttttg |
30360715 |
T |
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| Q |
112 |
tcttcaactttaaatgatttaggatagctggnnnnnnngtatttatttatagtttaaccaattctcgattaatttttatagattaaggagaaagaagtgg |
211 |
Q |
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| T |
30360714 |
tcttcaactttaaatgatttaggatagctggaaaaaaagtatttatttatagtttaaccaattctcgattaatttttatagattaaggagaaagaagtgg |
30360615 |
T |
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| Q |
212 |
tatacaaacgatacagagaggaaagtgaagcagcaagaatggtatgaataaa |
263 |
Q |
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| T |
30360614 |
tatacaaacgatacagagaggaaagtgaagcagcaagaatggtatgaataaa |
30360563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 1e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 1e-85
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 19916213 - 19915966
Alignment:
| Q |
12 |
aaccccttacacaggttcaagagtttgatttacatttgaatcatcgagccgtggatagagcacaatttgatcagaaggtaatgaaatcagtccgtctttg |
111 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |
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| T |
19916213 |
aaccccttacacaaattcaagagtttgatttacatttgaatcatcgagccgtggatagaacacaatttgatca-aaggtaatgaaatcagtccgtttttg |
19916115 |
T |
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| Q |
112 |
tcttcaactttaaatgatttaggatagctggnnnnnnngtatttatttatagtttaaccaattctcgattaatttttatagattaaggagaaagaagtgg |
211 |
Q |
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| T |
19916114 |
tcttcaactttaaat-atttaggatagctgggaaaaaagtatttatttatagtttgaccaattctcaattaatttttacagattaaggagaaagaaatgg |
19916016 |
T |
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| Q |
212 |
tatacaaacgatacagagaggaaagtgaagcagcaagaatggtatgaataaa |
263 |
Q |
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||| |||||||||| |||| || |||||||||||||||||||||||||||| |
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| T |
19916015 |
tat--aaacgatacaaagagaaacgtgaagcagcaagaatggtatgaataaa |
19915966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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