View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5799-12 (Length: 128)
Name: Solexa-NF5799-12
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5799-12 |
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| [»] chr7 (3 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 114; Significance: 3e-58; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 39839112 - 39839233
Alignment:
| Q |
7 |
aaaaagagcctacgacagattgaaacttcaccttccaaaacaattctgtcaactacctaaccttccaatgcctgaagatttccctgaatacccttcaaag |
106 |
Q |
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| T |
39839112 |
aaaaagaacctacgacagattgaaacttcaccttccaaaacaattctgtcaactacctaaccttccaatgcctgaagatttccctgaatacccttcaaag |
39839211 |
T |
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| Q |
107 |
aaacaattcataagctagcttg |
128 |
Q |
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| T |
39839212 |
aaacaattcataagctaccttg |
39839233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 31290041 - 31290146
Alignment:
| Q |
23 |
agattgaaacttcaccttccaaaacaattctgtcaactacctaaccttccaatgcctgaagatttccctgaatacccttcaaagaaacaattcataagct |
122 |
Q |
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| T |
31290041 |
agattcaaacttcaccttcctaaaccattatgtcaactacctaaccttccaatgcttgaagatttccctgaatacccttcaaagaaacagttcataaact |
31290140 |
T |
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| Q |
123 |
agcttg |
128 |
Q |
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| |||| |
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| T |
31290141 |
atcttg |
31290146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 31290748 - 31290656
Alignment:
| Q |
36 |
accttccaaaacaattctgtcaactacctaaccttccaatgcctgaagatttccctgaatacccttcaaagaaacaattcataagctagcttg |
128 |
Q |
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| T |
31290748 |
accttcctaaacaattgtgtcaactacttaaccttccaatgcctgaagatttccatgaatacccttcaaagaaacagttcataaactaccttg |
31290656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 7 - 128
Target Start/End: Complemental strand, 29857918 - 29857797
Alignment:
| Q |
7 |
aaaaagagcctacgacagattgaaacttcaccttccaaaacaattctgtcaactacctaaccttccaatgcctgaagatttccctgaatacccttcaaag |
106 |
Q |
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||||||| | || |||||||| ||||||||||| || |||||||||||||||||||||||| ||||| | || |||| || |||||||| || ||||| |
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| T |
29857918 |
aaaaagaacatatgacagattaaaacttcacctccctaaacaattctgtcaactacctaactttccattcccacaagaatttcctgaatatccaacaaag |
29857819 |
T |
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| Q |
107 |
aaacaattcataagctagcttg |
128 |
Q |
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| T |
29857818 |
aaacagttcataaactatcttg |
29857797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 17407750 - 17407826
Alignment:
| Q |
29 |
aaacttcaccttccaaaacaattctgtcaactacctaaccttccaatgcctgaagatttccctgaatacccttcaaa |
105 |
Q |
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|||||||| ||||| |||||||| ||||||||||| || ||||| | ||||| | |||||||||||||||||||| |
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| T |
17407750 |
aaacttcatcttcctaaacaattgtgtcaactacccaattttccattccctgatcacttccctgaatacccttcaaa |
17407826 |
T |
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