View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5799-13 (Length: 126)

Name: Solexa-NF5799-13
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5799-13
Solexa-NF5799-13
[»] chr5 (1 HSPs)
chr5 (26-98)||(42981171-42981243)
[»] chr6 (2 HSPs)
chr6 (21-97)||(1065198-1065274)
chr6 (20-99)||(20820957-20821036)
[»] chr8 (2 HSPs)
chr8 (26-96)||(30876752-30876822)
chr8 (8-96)||(30876557-30876645)


Alignment Details
Target: chr5 (Bit Score: 49; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 42981171 - 42981243
Alignment:
Q  26 gtttagaaatgtccattttaccaacctgtccttggttcaattcccaacaaccatttttatattaatgattttt 98  Q
    |||||||| ||| ||||||| ||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  42981171 gtttagaagtgttcattttatcaacctgtgactggttcaattcccaacaaccatttttatattaatgattttt 42981243  T

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Target: chr6 (Bit Score: 45; Significance: 4e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 1065198 - 1065274
Alignment:
Q  21 aaacagtttagaaatgtccattttaccaacctgtccttggttcaattcccaacaaccatttttatattaatgatttt 97  Q
    ||||||||||||| | ||||||||| |||||||||  |||||  ||||||| |||||||||||||||||||||||||    
T  1065198 aaacagtttagaagtatccattttatcaacctgtcactggtttgattcccagcaaccatttttatattaatgatttt 1065274  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 20820957 - 20821036
Alignment:
Q  20 aaaacagtttagaaatgtccattttaccaacctgtccttggttcaattcccaacaaccatttttatattaatgatttttt 99  Q
    ||||| ||||| || |||| ||||||||||||||||  || ||| ||||||| ||||||||||||| |||||||||||||    
T  20820957 aaaactgtttaaaagtgtctattttaccaacctgtcactgattcgattcccatcaaccatttttatcttaatgatttttt 20821036  T

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Target: chr8 (Bit Score: 43; Significance: 7e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 30876752 - 30876822
Alignment:
Q  26 gtttagaaatgtccattttaccaacctgtccttggttcaattcccaacaaccatttttatattaatgattt 96  Q
    |||||||| |||||||||||||||| ||||  |||||| ||||||| ||||||| ||||||||||||||||    
T  30876752 gtttagaagtgtccattttaccaacttgtcactggttcgattcccagcaaccatatttatattaatgattt 30876822  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 30876557 - 30876645
Alignment:
Q  8 aaatgcaatagaaaaacagtttagaaatgtccattttaccaacctgtccttggttcaattcccaacaaccatttttatattaatgattt 96  Q
    |||||||| || ||||  |||||||| |||||||||||||||| ||||  |||||| |||||||  |||||| ||||||||||||||||    
T  30876557 aaatgcaacagcaaaatggtttagaagtgtccattttaccaacttgtcactggttcgattcccagaaaccatatttatattaatgattt 30876645  T

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