View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5799-17 (Length: 119)
Name: Solexa-NF5799-17
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5799-17 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 115; Significance: 7e-59; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 7e-59
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 39733154 - 39733272
Alignment:
| Q |
1 |
atgaaccatgtcaaaatcaacaaaagtttgtctacaatccaaagtggtaaccacttcaacatcataaccgctaattcaaaagttgatattccaaatattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39733154 |
atgaaccatgtcaaaatcaacaaaagtttgtccacaatccaaagtggtaaccacttcaacatcataaccgctaattcaaaagttgatattccaaatattt |
39733253 |
T |
|
| Q |
101 |
ctcttggtagcacatgaac |
119 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
39733254 |
ctcttggtagcacatgaac |
39733272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 7e-59
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 39839804 - 39839686
Alignment:
| Q |
1 |
atgaaccatgtcaaaatcaacaaaagtttgtctacaatccaaagtggtaaccacttcaacatcataaccgctaattcaaaagttgatattccaaatattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39839804 |
atgaaccatgtcaaaatcaacaaaagtttgtccacaatccaaagtggtaaccacttcaacatcataaccgctaattcaaaagttgatattccaaatattt |
39839705 |
T |
|
| Q |
101 |
ctcttggtagcacatgaac |
119 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
39839704 |
ctcttggtagcacatgaac |
39839686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 31290622 - 31290586
Alignment:
| Q |
73 |
aattcaaaagttgatattccaaatatttctcttggta |
109 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31290622 |
aattcaagagttgatattccaaatatttctcttggta |
31290586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 29857039 - 29857131
Alignment:
| Q |
12 |
caaaatcaacaaaagtttgtctacaatccaaagtggtaaccacttcaacatcataaccgctaattcaaaagttgatattccaaatatttctct |
104 |
Q |
| |
|
|||||||||||||| ||||| || ||||||| ||||||||| |||| ||||||||| || ||| |||| |||||| | ||||| | |||||| |
|
|
| T |
29857039 |
caaaatcaacaaaatcttgtcaactatccaaactggtaaccatttcatcatcataactgccaatccaaatgttgatttcccaaaaacttctct |
29857131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University