View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5799-19 (Length: 118)
Name: Solexa-NF5799-19
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5799-19 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 62; Significance: 3e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 35148792 - 35148898
Alignment:
| Q |
7 |
aatcaagacatattggctggtaattatagtcttattaacacggnnnnnnnnnnnnnnntagaaaacttaagatctaagctaacctggagtcaggcatatt |
106 |
Q |
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| T |
35148792 |
aatcaagacatattggctggtaattatagtcttattaacacggaaaaaaaaaa-----tagaaaacttaagatctaagctaacctggagtcaggcatatt |
35148886 |
T |
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| Q |
107 |
aatccagttcca |
118 |
Q |
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| T |
35148887 |
aatccagttcca |
35148898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 35203096 - 35203150
Alignment:
| Q |
65 |
tagaaaacttaa-gatctaagctaacctggagtcaggcatattaatccagttcca |
118 |
Q |
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| T |
35203096 |
tagaaaacttaaagatctaagctaacctggaatcaggcatagcaatccagttcca |
35203150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 35192757 - 35192810
Alignment:
| Q |
65 |
tagaaaacttaagatctaagctaacctggagtcaggcatattaatccagttcca |
118 |
Q |
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| T |
35192757 |
tagaaaacttaatatctaagctaacctagaattaggcatagaaatccagttcca |
35192810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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