View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5799-23 (Length: 58)
Name: Solexa-NF5799-23
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5799-23 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 51; Significance: 4e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-21
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 14757424 - 14757474
Alignment:
| Q |
8 |
aacatgtctgtcactgatgttgcttggaggaatcttaacgatgtcgatatg |
58 |
Q |
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| T |
14757424 |
aacatgtctgtcactgatgttgcttggaggaatcttaacgatgtcgatatg |
14757474 |
T |
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Target: chr1 (Bit Score: 42; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 3613601 - 3613646
Alignment:
| Q |
8 |
aacatgtctgtcactgatgttgcttggaggaatcttaacgatgtcg |
53 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3613601 |
aacatgtctgtcactgatgttgcttggaggaatctcaacgatgtcg |
3613646 |
T |
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