View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5799-24 (Length: 58)

Name: Solexa-NF5799-24
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5799-24
Solexa-NF5799-24
[»] chr7 (4 HSPs)
chr7 (2-58)||(36167720-36167776)
chr7 (2-58)||(12859234-12859290)
chr7 (2-58)||(19886617-19886673)
chr7 (2-58)||(32775216-32775272)
[»] chr5 (3 HSPs)
chr5 (1-58)||(32325800-32325857)
chr5 (2-58)||(7992397-7992453)
chr5 (2-47)||(12904980-12905025)
[»] chr3 (3 HSPs)
chr3 (2-58)||(32130201-32130257)
chr3 (2-58)||(53208674-53208730)
chr3 (2-58)||(7322900-7322956)
[»] chr2 (2 HSPs)
chr2 (2-58)||(44673215-44673271)
chr2 (2-58)||(25438332-25438388)
[»] chr4 (3 HSPs)
chr4 (3-58)||(5650748-5650803)
chr4 (5-58)||(16497899-16497952)
chr4 (2-58)||(2588480-2588536)
[»] chr6 (1 HSPs)
chr6 (5-58)||(13425665-13425718)
[»] chr8 (7 HSPs)
chr8 (2-58)||(1548182-1548238)
chr8 (2-58)||(3117748-3117804)
chr8 (2-58)||(23033441-23033497)
chr8 (2-58)||(34784508-34784564)
chr8 (2-58)||(20900819-20900875)
chr8 (2-58)||(3277563-3277619)
chr8 (2-32)||(29168561-29168591)


Alignment Details
Target: chr7 (Bit Score: 53; Significance: 3e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-22
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 36167776 - 36167720
Alignment:
Q  2 tacgtgccacagcacctcggccgtgcttcgatcctacttacgaaccatgttttctct 58  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36167776 tacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccatgttttctct 36167720  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 12859290 - 12859234
Alignment:
Q  2 tacgtgccacagcacctcggccgtgcttcgatcctacttacgaaccatgttttctct 58  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||    
T  12859290 tacgtgccacagcacctcgaccgtgcttcggtcctacttacgaaccgtgttttctct 12859234  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 19886617 - 19886673
Alignment:
Q  2 tacgtgccacagcacctcggccgtgcttcgatcctacttacgaaccatgttttctct 58  Q
    ||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||    
T  19886617 tacgtgccacagcacctcgaccgtgcttcgatcctacttacgaactgtgttttctct 19886673  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 32775216 - 32775272
Alignment:
Q  2 tacgtgccacagcacctcggccgtgcttcgatcctacttacgaaccatgttttctct 58  Q
    ||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||    
T  32775216 tacgtgccacagcacctcgaccgtgcttcgatcctacttacgaactgtgttttctct 32775272  T

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Target: chr5 (Bit Score: 50; Significance: 2e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 32325857 - 32325800
Alignment:
Q  1 gtacgtgccacagcacctcggccgtgcttcgatcctacttacgaaccatgttttctct 58  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  32325857 gtacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccgtgttttctct 32325800  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-20
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 7992453 - 7992397
Alignment:
Q  2 tacgtgccacagcacctcggccgtgcttcgatcctacttacgaaccatgttttctct 58  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  7992453 tacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccgtgttttctct 7992397  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 12905025 - 12904980
Alignment:
Q  2 tacgtgccacagcacctcggccgtgcttcgatcctacttacgaacc 47  Q
    ||||||||||| ||| ||| || |||||||||||||||||||||||    
T  12905025 tacgtgccacaacacatcgaccatgcttcgatcctacttacgaacc 12904980  T

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Target: chr3 (Bit Score: 49; Significance: 7e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-20
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 32130201 - 32130257
Alignment:
Q  2 tacgtgccacagcacctcggccgtgcttcgatcctacttacgaaccatgttttctct 58  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  32130201 tacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccgtgttttctct 32130257  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 53208730 - 53208674
Alignment:
Q  2 tacgtgccacagcacctcggccgtgcttcgatcctacttacgaaccatgttttctct 58  Q
    ||||||||||||||||||| ||||| ||||||||||||||| |||| ||||||||||    
T  53208730 tacgtgccacagcacctcgaccgtgtttcgatcctacttacaaaccgtgttttctct 53208674  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 7322900 - 7322956
Alignment:
Q  2 tacgtgccacagcacctcggccgtgcttcgatcctacttacgaaccatgttttctct 58  Q
    ||||||||||||||||||| |||||||||  | ||||||||||||| ||||||||||    
T  7322900 tacgtgccacagcacctcgaccgtgcttcagttctacttacgaaccgtgttttctct 7322956  T

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Target: chr2 (Bit Score: 49; Significance: 7e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-20
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 44673215 - 44673271
Alignment:
Q  2 tacgtgccacagcacctcggccgtgcttcgatcctacttacgaaccatgttttctct 58  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  44673215 tacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccgtgttttctct 44673271  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 25438332 - 25438388
Alignment:
Q  2 tacgtgccacagcacctcggccgtgcttcgatcctacttacgaaccatgttttctct 58  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||    
T  25438332 tacgtgccacagcacctcgaccgtgctttgatcctacttacgaaccgtgttttctct 25438388  T

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Target: chr4 (Bit Score: 48; Significance: 3e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-19
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 5650803 - 5650748
Alignment:
Q  3 acgtgccacagcacctcggccgtgcttcgatcctacttacgaaccatgttttctct 58  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  5650803 acgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccatgttatctct 5650748  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 16497952 - 16497899
Alignment:
Q  5 gtgccacagcacctcggccgtgcttcgatcctacttacgaaccatgttttctct 58  Q
    |||||||||||||||| |||||||||| ||||||||||||||| ||||||||||    
T  16497952 gtgccacagcacctcgaccgtgcttcggtcctacttacgaaccgtgttttctct 16497899  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 2588536 - 2588480
Alignment:
Q  2 tacgtgccacagcacctcggccgtgcttcgatcctacttacgaaccatgttttctct 58  Q
    ||||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||||    
T  2588536 tacgtgccacagcacctcgaccgtacttcggtcctacttacgaaccgtgttttctct 2588480  T

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Target: chr6 (Bit Score: 46; Significance: 4e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-18
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 13425718 - 13425665
Alignment:
Q  5 gtgccacagcacctcggccgtgcttcgatcctacttacgaaccatgttttctct 58  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  13425718 gtgccacagcacctcgaccgtgcttcgatcctacttacgaaccgtgttttctct 13425665  T

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Target: chr8 (Bit Score: 45; Significance: 2e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 1548182 - 1548238
Alignment:
Q  2 tacgtgccacagcacctcggccgtgcttcgatcctacttacgaaccatgttttctct 58  Q
    |||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  1548182 tacgtgccacagcacctcgaacgtgcttcgatcctacttacgaaccgtgttttctct 1548238  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 3117748 - 3117804
Alignment:
Q  2 tacgtgccacagcacctcggccgtgcttcgatcctacttacgaaccatgttttctct 58  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||    
T  3117748 tacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtgttttctct 3117804  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 23033441 - 23033497
Alignment:
Q  2 tacgtgccacagcacctcggccgtgcttcgatcctacttacgaaccatgttttctct 58  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||    
T  23033441 tacgtgccacaacacctcgaccgtgcttcgatcctacttacgaaccgtgttttctct 23033497  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 34784564 - 34784508
Alignment:
Q  2 tacgtgccacagcacctcggccgtgcttcgatcctacttacgaaccatgttttctct 58  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||    
T  34784564 tacgtgccacagcacctcgaccgtgcttcgatcctacttacaaaccgtgttttctct 34784508  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 20900819 - 20900875
Alignment:
Q  2 tacgtgccacagcacctcggccgtgcttcgatcctacttacgaaccatgttttctct 58  Q
    ||||||||||||||||||| | ||||||||||||||||||| |||| ||||||||||    
T  20900819 tacgtgccacagcacctcgactgtgcttcgatcctacttacaaaccgtgttttctct 20900875  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 3277563 - 3277619
Alignment:
Q  2 tacgtgccacagcacctcggccgtgcttcgatcctacttacgaaccatgttttctct 58  Q
    ||||||||||| ||||||| ||||||||| ||||||||||| |||  ||||||||||    
T  3277563 tacgtgccacaacacctcgaccgtgcttcaatcctacttacaaacagtgttttctct 3277619  T

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Target: chr8; HSP #7
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 2 - 32
Target Start/End: Complemental strand, 29168591 - 29168561
Alignment:
Q  2 tacgtgccacagcacctcggccgtgcttcga 32  Q
    ||||||||||||||||||| |||||||||||    
T  29168591 tacgtgccacagcacctcgaccgtgcttcga 29168561  T

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