View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5799-25 (Length: 56)
Name: Solexa-NF5799-25
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5799-25 |
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Alignment Details
Target: chr8 (Bit Score: 38; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 12041826 - 12041789
Alignment:
| Q |
7 |
agatacacattgtcttgatgcctcatcaattcaagcag |
44 |
Q |
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| T |
12041826 |
agatacacattgtcttgatgcctcatcaattcaagcag |
12041789 |
T |
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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 12060076 - 12060028
Alignment:
| Q |
7 |
agatacacattgtcttgatgcctcatcaattcaagcaggcaaataagta |
55 |
Q |
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|||||||||||||||||||| || |||||||| ||||||| |||||||| |
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| T |
12060076 |
agatacacattgtcttgatggctaatcaattctagcaggcgaataagta |
12060028 |
T |
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