View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5799-4 (Length: 174)
Name: Solexa-NF5799-4
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5799-4 |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 4e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 4e-52
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 4011183 - 4011346
Alignment:
| Q |
8 |
cttgtgaacggtcataataacttaatgcctcatgttatagataaatgacatggtacaaattctagattcaaatgaaaaacatcggttctaggactcacac |
107 |
Q |
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| T |
4011183 |
cttgtgaacggtcataataacttaatgcctcatgctatagataaataacatgatataaattctaagttcaaatgaaaaagattggctctagggctcacac |
4011282 |
T |
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| Q |
108 |
ctacagtagcattaactactatttgagcatgcactctagtacaagaacaacaacaaaaactaag |
171 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||| || |||||||| ||||||| |
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| T |
4011283 |
ctacagtagcattaactactatttgagcatgcagtctagaacaacaagaacaacaataactaag |
4011346 |
T |
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