View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5799-5 (Length: 169)
Name: Solexa-NF5799-5
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5799-5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 39839607 - 39839439
Alignment:
| Q |
1 |
acagataccagacacataaaaggaacctaccgagctacgaacaaccatggaaggtaaagcatgatgattgctaagatcaagtgagagttccattccagaa |
100 |
Q |
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| T |
39839607 |
acagataccagacacataaaaggaacttaccgagctacgaacaaccatggaaggtaaagcatgatgattgctaagatcaagtgagagttccattccagaa |
39839508 |
T |
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| Q |
101 |
tttccacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaagcataa |
169 |
Q |
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| T |
39839507 |
tttccacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaagcataa |
39839439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 39733355 - 39733519
Alignment:
| Q |
5 |
ataccagacacataaaaggaacctaccgagctacgaacaaccatggaaggtaaagcatgatgattgctaagatcaagtgagagttccattccagaatttc |
104 |
Q |
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| T |
39733355 |
ataccagacacataaaaggaacttaccgagctacgaacaaccatggaaggtaaagcatgatgattgctaagatcaagtgagagttccattccagaatttc |
39733454 |
T |
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| Q |
105 |
cacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaagcataa |
169 |
Q |
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| T |
39733455 |
cacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaagcataa |
39733519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 28 - 167
Target Start/End: Original strand, 29857435 - 29857574
Alignment:
| Q |
28 |
taccgagctacgaacaaccatggaaggtaaagcatgatgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttc |
127 |
Q |
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| T |
29857435 |
taccgagctacgaagaacaatagaaggtgatgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttc |
29857534 |
T |
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| Q |
128 |
tttccttcaaaatttttccctgacttgtaatcacaagcat |
167 |
Q |
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| T |
29857535 |
ttccctctaaaactttcacctgatttataatcacaagcat |
29857574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 17408175 - 17408116
Alignment:
| Q |
73 |
aagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttcc |
132 |
Q |
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| T |
17408175 |
aagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttcc |
17408116 |
T |
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