View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5799-6 (Length: 151)
Name: Solexa-NF5799-6
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5799-6 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 45039690 - 45039549
Alignment:
| Q |
10 |
agatgaagaagttgaagctgggacattatattgaccacaatcccttcttgcattccacaataaatcttgattaaaacttccttctctagaatcctagctt |
109 |
Q |
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| T |
45039690 |
agatgaagaagttgaagctgggacattatattgaccacaatcccttcttgcattccacaataaatcttgattaaaacttccttctctagaatcctagctt |
45039591 |
T |
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| Q |
110 |
caacctctagaagtgattcatttctcctgtaacattcttcag |
151 |
Q |
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| T |
45039590 |
caacctctagaagtgattcatttctcccgtaacattcttcag |
45039549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 3e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 29377444 - 29377302
Alignment:
| Q |
9 |
gagatgaagaagttgaagctgggacattatattgaccacaatcccttcttgcattccacaataaatcttgattaaaacttccttctctagaatcctagct |
108 |
Q |
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| T |
29377444 |
gagatgaagaagctgaagctgggacattatattgaccacaatcccctcttgcatgccacaatgaatcttgattaacacttcattccctagaaccctagct |
29377345 |
T |
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| Q |
109 |
tcaacctctagaagtgattcatttctcctgtaacattcttcag |
151 |
Q |
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| T |
29377344 |
tcaacctctacaagtgattcatttcgcccgtaacattcttcag |
29377302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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