View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5799-7 (Length: 150)

Name: Solexa-NF5799-7
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5799-7
Solexa-NF5799-7
[»] chr1 (11 HSPs)
chr1 (14-150)||(35149581-35149717)
chr1 (17-117)||(29657422-29657522)
chr1 (14-69)||(10061647-10061702)
chr1 (18-68)||(23906605-23906655)
chr1 (14-111)||(35413081-35413178)
chr1 (14-69)||(21540129-21540184)
chr1 (14-69)||(43537143-43537198)
chr1 (14-55)||(9113473-9113514)
chr1 (22-59)||(26470007-26470044)
chr1 (17-57)||(4684526-4684566)
chr1 (14-65)||(11470079-11470130)
[»] chr3 (5 HSPs)
chr3 (17-66)||(34905904-34905953)
chr3 (17-118)||(18271912-18272013)
chr3 (14-69)||(26443004-26443059)
chr3 (17-66)||(2671961-2672010)
chr3 (14-59)||(45852942-45852987)
[»] chr7 (5 HSPs)
chr7 (14-106)||(46413704-46413796)
chr7 (14-69)||(21882767-21882822)
chr7 (15-68)||(44601056-44601109)
chr7 (17-57)||(8123749-8123789)
chr7 (14-57)||(46297668-46297711)
[»] chr5 (4 HSPs)
chr5 (14-106)||(30700831-30700923)
chr5 (14-109)||(30735279-30735374)
chr5 (14-95)||(3040232-3040313)
chr5 (19-66)||(30071831-30071878)
[»] chr4 (3 HSPs)
chr4 (14-110)||(42504151-42504247)
chr4 (22-106)||(37762870-37762954)
chr4 (14-59)||(24060631-24060676)
[»] chr2 (8 HSPs)
chr2 (14-106)||(20143023-20143115)
chr2 (14-109)||(19945682-19945777)
chr2 (17-104)||(13716673-13716760)
chr2 (19-57)||(3167956-3167994)
chr2 (17-59)||(37714481-37714523)
chr2 (17-66)||(38320201-38320250)
chr2 (21-57)||(5881441-5881477)
chr2 (18-65)||(31845473-31845520)
[»] chr6 (4 HSPs)
chr6 (14-106)||(3855697-3855788)
chr6 (14-59)||(6784710-6784755)
chr6 (32-69)||(28867258-28867295)
chr6 (32-59)||(2130500-2130527)
[»] scaffold0194 (1 HSPs)
scaffold0194 (32-111)||(27065-27144)
[»] chr8 (4 HSPs)
chr8 (14-66)||(5718448-5718500)
chr8 (11-59)||(36947233-36947281)
chr8 (22-57)||(26415615-26415650)
chr8 (14-69)||(29414437-29414492)
[»] scaffold0122 (1 HSPs)
scaffold0122 (14-69)||(18689-18744)


Alignment Details
Target: chr1 (Bit Score: 101; Significance: 2e-50; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 35149717 - 35149581
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtcttgaannnnnnnngataaattttgtcactgtacctatcattttcctaaa 113  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||        ||||||||||||||||||||||||||||||||||||    
T  35149717 aagggagataatgatgtataattaaggaaaggtgttagcaaatacattctcttgaaatttttttgataaattttgtcactgtacctatcattttcctaaa 35149618  T
Q  114 aataaagaatcaaaattgcatttaagtctgtattata 150  Q
    |||||||||||||||||||||||||||||||| ||||    
T  35149617 aataaagaatcaaaattgcatttaagtctgtaatata 35149581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 29657422 - 29657522
Alignment:
Q  17 ggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtcttgaannnnnnnngataaattttgtcactgtacctatcattttcctaaaaat 116  Q
    |||||||||||| | |||||||||||||||||||||||||||| |||||||||        |||||| |||||||||||| ||||||||| |||||||||    
T  29657422 ggaggtaatgatatgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaaatttgtcactgtatctatcatttccctaaaaat 29657521  T
Q  117 a 117  Q
    |    
T  29657522 a 29657522  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 10061647 - 10061702
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtcttgaa 69  Q
    ||||||||||||||||| |||||||||||| ||||||||||||| | |||||||||    
T  10061647 aagggaggtaatgatgtgtaattaaggaaatgtgttagcaaataaactgtcttgaa 10061702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 23906655 - 23906605
Alignment:
Q  18 gaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtcttga 68  Q
    ||||||||| ||| ||||||| |||||||||||||||||||||||||||||    
T  23906655 gaggtaatggtgtgtaattaaagaaaggtgttagcaaatacattgtcttga 23906605  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 35413081 - 35413178
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtcttgaannnnnnnngataaattttgtcactgtacctatcattttccta 111  Q
    ||||||||||||  ||| ||||||||||||||||||| |||||||| | |||||||        |||||||||||||| | || ||||||||| ||||    
T  35413081 aagggaggtaatagtgtgtaattaaggaaaggtgttaacaaatacactctcttgaaattttcttgataaattttgtcattatatctatcatttcccta 35413178  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 21540129 - 21540184
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtcttgaa 69  Q
    ||||||| |||||| || ||||||| ||||||||||| |||||||| |||||||||    
T  21540129 aagggagataatgaagtgtaattaaagaaaggtgttaacaaatacactgtcttgaa 21540184  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 43537198 - 43537143
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtcttgaa 69  Q
    ||||||||||||| ||| ||||||| |||| |||||| |||||||| |||||||||    
T  43537198 aagggaggtaatggtgtgtaattaaagaaatgtgttaacaaatacactgtcttgaa 43537143  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 9113514 - 9113473
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaa 55  Q
    ||||||||||||||| | ||||||||||||||| ||||||||    
T  9113514 aagggaggtaatgatctgtaattaaggaaaggttttagcaaa 9113473  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 26470007 - 26470044
Alignment:
Q  22 taatgatgtataattaaggaaaggtgttagcaaataca 59  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  26470007 taatggtgtgtaattaaggaaaggtgttagcaaataca 26470044  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 4684526 - 4684566
Alignment:
Q  17 ggaggtaatgatgtataattaaggaaaggtgttagcaaata 57  Q
    |||| ||||| ||| ||||||||||||||||||||||||||    
T  4684526 ggagataatggtgtgtaattaaggaaaggtgttagcaaata 4684566  T

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Target: chr1; HSP #11
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 11470079 - 11470130
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtct 65  Q
    ||||||||||||||||| |||||||| |||  |||||  |||||||||||||    
T  11470079 aagggaggtaatgatgtgtaattaagaaaatatgttaagaaatacattgtct 11470130  T

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Target: chr3 (Bit Score: 46; Significance: 1e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 34905904 - 34905953
Alignment:
Q  17 ggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtctt 66  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34905904 ggaggtaatgatgtataattaaggaaaggtgttagcaaatacactgtctt 34905953  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 18272013 - 18271912
Alignment:
Q  17 ggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtcttgaannnnnnnngataaattttgtcactgtacctatcattttcctaaaaat 116  Q
    |||||||||| ||| ||||||| |||||||||||||||||||  | |||| ||        |||||||||||||||| || ||||||||||||  |||||    
T  18272013 ggaggtaatggtgtgtaattaaagaaaggtgttagcaaatactctatcttaaaattttcttgataaattttgtcactatatctatcattttccataaaat 18271914  T
Q  117 aa 118  Q
    ||    
T  18271913 aa 18271912  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 26443004 - 26443059
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtcttgaa 69  Q
    ||||||||||||| ||| |||||||  |||||||||| |||||||| |||||||||    
T  26443004 aagggaggtaatggtgtgtaattaacaaaaggtgttaccaaatacactgtcttgaa 26443059  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 2671961 - 2672010
Alignment:
Q  17 ggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtctt 66  Q
    |||| ||||||||| ||||||||||||| ||||| |||||||| ||||||    
T  2671961 ggagataatgatgtgtaattaaggaaagatgttaacaaatacactgtctt 2672010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 45852987 - 45852942
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaataca 59  Q
    ||||||| ||||||| | |||||||| |||||||||||||||||||    
T  45852987 aagggagataatgatatgtaattaagaaaaggtgttagcaaataca 45852942  T

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Target: chr7 (Bit Score: 45; Significance: 5e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 46413796 - 46413704
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtcttgaannnnnnnngataaattttgtcactgtacctatcattt 106  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||         ||||||||||||| |||| |||||||||    
T  46413796 aagggaggtaatgatgtgtaattaaggaaaggtgttaacaaatacactgtcttgaaatttttttaataaattttgtcaatgtatctatcattt 46413704  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 21882822 - 21882767
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtcttgaa 69  Q
    ||||||||||||| ||| |||||||||||| ||||||||||||||| |||||||||    
T  21882822 aagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgtcttgaa 21882767  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 44601056 - 44601109
Alignment:
Q  15 agggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtcttga 68  Q
    |||||| ||||||||| |||||||| ||| ||||||||||||||| ||||||||    
T  44601056 agggagataatgatgtgtaattaagaaaatgtgttagcaaatacactgtcttga 44601109  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 8123749 - 8123789
Alignment:
Q  17 ggaggtaatgatgtataattaaggaaaggtgttagcaaata 57  Q
    |||| |||| |||||||||||| ||||||||||||||||||    
T  8123749 ggagataataatgtataattaaagaaaggtgttagcaaata 8123789  T

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Target: chr7; HSP #5
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 46297668 - 46297711
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaata 57  Q
    ||||||| ||||| ||| |||||||||||| |||||||||||||    
T  46297668 aagggagttaatggtgtgtaattaaggaaatgtgttagcaaata 46297711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 5e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 30700923 - 30700831
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtcttgaannnnnnnngataaattttgtcactgtacctatcattt 106  Q
    ||||||||||||| ||| |||||||| ||||||||||||||||||| |||||| ||        ||||||||||||||||| |||||||||||    
T  30700923 aagggaggtaatgttgtgtaattaagaaaaggtgttagcaaatacactgtcttaaaatttttttgataaattttgtcactgcacctatcattt 30700831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 30735374 - 30735279
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtcttgaannnnnnnngataaattttgtcactgtacctatcattttcc 109  Q
    ||||||||||||| ||  |||||||| ||| ||||||||||||||| ||| |||||        ||||||||||||||||||||||||||||||||    
T  30735374 aagggaggtaatgctgggtaattaagaaaaagtgttagcaaatacactgttttgaaattttcttgataaattttgtcactgtacctatcattttcc 30735279  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 3040313 - 3040232
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtcttgaannnnnnnngataaattttgtcactgt 95  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||| |||||| ||        ||||||||||||||||||    
T  3040313 aagggaggtaatggtgtgtaattaaggaaaggtgttagcaaatacactgtcttaaaattttcttgataaattttgtcactgt 3040232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 30071831 - 30071878
Alignment:
Q  19 aggtaatgatgtataattaaggaaaggtgttagcaaatacattgtctt 66  Q
    ||||| || ||| ||||| |||||||| ||||||||||||||||||||    
T  30071831 aggtagtggtgtgtaattgaggaaaggagttagcaaatacattgtctt 30071878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 5e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 42504247 - 42504151
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtcttgaannnnnnnngataaattttgtcactgtacctatcattttcct 110  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||| |||||| ||        |||| ||||||||| |||| |||||||||||||    
T  42504247 aagggaggtaatgatgtgtaattaaggaaaggtgttaacaaatacactgtcttaaaattttcttgatacattttgtcattgtatctatcattttcct 42504151  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 37762870 - 37762954
Alignment:
Q  22 taatgatgtataattaaggaaaggtgttagcaaatacattgtcttgaannnnnnnngataaattttgtcactgtacctatcattt 106  Q
    ||||||||| |||||||||||| |||||| ||||||||||||||||||        |||||||||||||||| || |||||||||    
T  37762870 taatgatgtgtaattaaggaaaagtgttaacaaatacattgtcttgaaatttttttgataaattttgtcactctatctatcattt 37762954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 24060631 - 24060676
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaataca 59  Q
    ||||||| ||||| ||| |||||||||||| |||||||||||||||    
T  24060631 aagggagataatggtgtgtaattaaggaaatgtgttagcaaataca 24060676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 5e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 20143023 - 20143115
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtcttgaannnnnnnngataaattttgtcactgtacctatcattt 106  Q
    |||| |||||||||||| |||||||||||||||||||| ||||||| | |||||||        ||||||||||||||||||| |||||||||    
T  20143023 aaggaaggtaatgatgtgtaattaaggaaaggtgttagaaaatacactatcttgaaattttcttgataaattttgtcactgtatctatcattt 20143115  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 19945777 - 19945682
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtcttgaannnnnnnngataaattttgtcactgtacctatcattttcc 109  Q
    ||||||||||||| ||| ||||||||||||| | ||| |||||||| |||||| ||        ||||||||||||||||||| ||||||||||||    
T  19945777 aagggaggtaatggtgtgtaattaaggaaagatattaacaaatacactgtcttaaaattttcttgataaattttgtcactgtatctatcattttcc 19945682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 13716760 - 13716673
Alignment:
Q  17 ggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtcttgaannnnnnnngataaattttgtcactgtacctatcat 104  Q
    |||||||||  ||| |||||||| ||||||||||||||||||| ||| |||||        ||||||||||||||||||| |||||||    
T  13716760 ggaggtaatagtgtgtaattaagaaaaggtgttagcaaatacactgttttgaaattttcttgataaattttgtcactgtatctatcat 13716673  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 3167956 - 3167994
Alignment:
Q  19 aggtaatgatgtataattaaggaaaggtgttagcaaata 57  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  3167956 aggtaatgatgtgtaattaaagaaaggtgttagcaaata 3167994  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 37714481 - 37714523
Alignment:
Q  17 ggaggtaatgatgtataattaaggaaaggtgttagcaaataca 59  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||    
T  37714481 ggagataatggtgtgtaattaaggaaaggtgttagcaaataca 37714523  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 38320250 - 38320201
Alignment:
Q  17 ggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtctt 66  Q
    |||||||||||||| ||| |||||||| |||||| |||||||| ||||||    
T  38320250 ggaggtaatgatgtgtaaataaggaaatgtgttatcaaatacactgtctt 38320201  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 5881477 - 5881441
Alignment:
Q  21 gtaatgatgtataattaaggaaaggtgttagcaaata 57  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  5881477 gtaatgatgtgtaattaaggaaaggtattagcaaata 5881441  T

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Target: chr2; HSP #8
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 31845473 - 31845520
Alignment:
Q  18 gaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtct 65  Q
    ||||||||| ||| ||||||||| ||| |||||||||||||| |||||    
T  31845473 gaggtaatggtgtgtaattaaggtaagatgttagcaaatacactgtct 31845520  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 3855788 - 3855697
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtcttgaannnnnnnngataaattttgtcactgtacctatcattt 106  Q
    |||||| ||||| |||| ||||||||||||||||||||| |||||| |||||||||        ||||||||||||||||||| |||||||||    
T  3855788 aagggatgtaataatgtgtaattaaggaaaggtgttagc-aatacactgtcttgaaattttcttgataaattttgtcactgtatctatcattt 3855697  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 6784755 - 6784710
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaataca 59  Q
    ||||||| ||||| ||| |||||||| |||||||||||||||||||    
T  6784755 aagggagataatggtgtgtaattaagaaaaggtgttagcaaataca 6784710  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 28867258 - 28867295
Alignment:
Q  32 taattaaggaaaggtgttagcaaatacattgtcttgaa 69  Q
    |||||||||||| || ||||||||||||||||||||||    
T  28867258 taattaaggaaatgttttagcaaatacattgtcttgaa 28867295  T

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Target: chr6; HSP #4
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 59
Target Start/End: Complemental strand, 2130527 - 2130500
Alignment:
Q  32 taattaaggaaaggtgttagcaaataca 59  Q
    ||||||||||||||||||||||||||||    
T  2130527 taattaaggaaaggtgttagcaaataca 2130500  T

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Target: scaffold0194 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 27144 - 27065
Alignment:
Q  32 taattaaggaaaggtgttagcaaatacattgtcttgaannnnnnnngataaattttgtcactgtacctatcattttccta 111  Q
    ||||||||||||||||||| |||||||| |||||||||        ||||||||||||||||||| ||||||||| ||||    
T  27144 taattaaggaaaggtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcccta 27065  T

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Target: chr8 (Bit Score: 33; Significance: 0.0000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 5718500 - 5718448
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtctt 66  Q
    |||| |||||||| ||| |||||||||||| ||||||||||||||| ||||||    
T  5718500 aaggaaggtaatggtgtgtaattaaggaaatgtgttagcaaatacactgtctt 5718448  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 36947281 - 36947233
Alignment:
Q  11 atgaagggaggtaatgatgtataattaaggaaaggtgttagcaaataca 59  Q
    |||||||||||||||||||||||||||| |||| ||||||  |||||||    
T  36947281 atgaagggaggtaatgatgtataattaaagaaatgtgttaataaataca 36947233  T

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Target: chr8; HSP #3
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 26415615 - 26415650
Alignment:
Q  22 taatgatgtataattaaggaaaggtgttagcaaata 57  Q
    ||||||||| ||||||||||||||| ||||||||||    
T  26415615 taatgatgtgtaattaaggaaaggtattagcaaata 26415650  T

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Target: chr8; HSP #4
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 29414437 - 29414492
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtcttgaa 69  Q
    |||| |||||||| ||| ||||||||||||||||||| ||||| || ||| |||||    
T  29414437 aaggaaggtaatggtgtttaattaaggaaaggtgttaacaaatgcactgttttgaa 29414492  T

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Target: scaffold0122 (Bit Score: 28; Significance: 0.0000008; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 18689 - 18744
Alignment:
Q  14 aagggaggtaatgatgtataattaaggaaaggtgttagcaaatacattgtcttgaa 69  Q
    ||||||| ||||| ||  |||||||||||| ||||||||||||||| ||| |||||    
T  18689 aagggagataatggtgagtaattaaggaaatgtgttagcaaatacactgttttgaa 18744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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