View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5799-9 (Length: 137)

Name: Solexa-NF5799-9
Description: NF5799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5799-9
Solexa-NF5799-9
[»] chr5 (8 HSPs)
chr5 (9-123)||(35847009-35847124)
chr5 (22-123)||(42742403-42742504)
chr5 (28-137)||(3204178-3204291)
chr5 (22-125)||(2706971-2707074)
chr5 (22-137)||(29685724-29685839)
chr5 (22-123)||(18557451-18557550)
chr5 (22-82)||(39368815-39368875)
chr5 (22-95)||(25341638-25341711)
[»] chr1 (7 HSPs)
chr1 (22-137)||(38709851-38709966)
chr1 (22-137)||(39908889-39909004)
chr1 (22-137)||(4391505-4391620)
chr1 (24-125)||(13987531-13987632)
chr1 (40-106)||(28887701-28887767)
chr1 (39-125)||(38564815-38564898)
chr1 (43-92)||(17891454-17891503)
[»] chr3 (7 HSPs)
chr3 (22-136)||(45181493-45181607)
chr3 (9-123)||(16284978-16285092)
chr3 (22-125)||(2782137-2782240)
chr3 (9-123)||(17324212-17324326)
chr3 (22-125)||(3968618-3968721)
chr3 (22-125)||(4000084-4000187)
chr3 (22-125)||(18983175-18983276)
[»] chr4 (8 HSPs)
chr4 (29-137)||(1799044-1799152)
chr4 (9-137)||(26500330-26500462)
chr4 (22-122)||(37707423-37707523)
chr4 (22-125)||(40813849-40813952)
chr4 (9-123)||(10388473-10388587)
chr4 (42-137)||(17416597-17416692)
chr4 (22-78)||(42218980-42219036)
chr4 (76-123)||(23040625-23040672)
[»] chr8 (7 HSPs)
chr8 (22-123)||(38387830-38387931)
chr8 (22-123)||(46294-46396)
chr8 (9-137)||(1579036-1579164)
chr8 (28-93)||(40531176-40531241)
chr8 (9-83)||(544405-544479)
chr8 (26-123)||(23264619-23264715)
chr8 (38-94)||(36796546-36796602)
[»] chr7 (5 HSPs)
chr7 (22-137)||(2570058-2570173)
chr7 (22-136)||(27993604-27993718)
chr7 (22-125)||(46262187-46262290)
chr7 (22-123)||(35206761-35206860)
chr7 (22-81)||(6003328-6003387)
[»] chr2 (7 HSPs)
chr2 (22-137)||(41958129-41958246)
chr2 (22-137)||(4397498-4397613)
chr2 (22-137)||(42048284-42048399)
chr2 (29-136)||(37128998-37129105)
chr2 (20-110)||(44888385-44888473)
chr2 (27-125)||(9560861-9560959)
chr2 (42-97)||(4162107-4162162)
[»] chr6 (2 HSPs)
chr6 (38-105)||(7546513-7546580)
chr6 (28-125)||(12129130-12129225)


Alignment Details
Target: chr5 (Bit Score: 88; Significance: 1e-42; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 35847124 - 35847009
Alignment:
Q  9 atcgacccgcaaaactcccgacacaagtcaaaaa-ggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccacca 107  Q
    |||| ||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  35847124 atcggcccacaaaactcccgacacaagtcaaaaaaggcacccatcaactcacaaaccaccagagcagacaccttaacatgtccaaaaacttgacccacca 35847025  T
Q  108 ataacccgatgccaaa 123  Q
    ||||||||||||||||    
T  35847024 ataacccgatgccaaa 35847009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 42742403 - 42742504
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgcca 121  Q
    ||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||    
T  42742403 actcccgacacaagtcaaaaaggcaccccacaacccacgaaccaccagagcagacacctaaacctgttcaaaaacttgacccaccaataacccgatgcca 42742502  T
Q  122 aa 123  Q
    ||    
T  42742503 aa 42742504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 3204291 - 3204178
Alignment:
Q  28 gacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaa----cctgtccaaaaactcgacccaccaataacccgatgccaaa 123  Q
    ||||||||| |||||||||||||||||||||| | ||||||||||| |||||||||    |||| |||||| ||||||||||||||||||||||||||||    
T  3204291 gacacaagttaaaaaggcacccctcaactcacgagccaccagagcatacaccttaattaacctgaccaaaacctcgacccaccaataacccgatgccaaa 3204192  T
Q  124 tttccaagacagag 137  Q
     ||| |||||||||    
T  3204191 attcaaagacagag 3204178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 2707074 - 2706971
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgcca 121  Q
    |||||||||||||||||  || |||||||||||||||| ||||||| |||||| ||||||||||||||||| |||||| | ||||||||||| |||||||    
T  2707074 actcccgacacaagtcattaaagcacccctcaactcacgaaccaccggagcaggcaccttaacctgtccaagaactcggcacaccaataaccagatgcca 2706975  T
Q  122 aatt 125  Q
    ||||    
T  2706974 aatt 2706971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 29685839 - 29685724
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgcca 121  Q
    |||||||||||| ||||  |||| || ||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||||||||||||  ||||||    
T  29685839 actcccgacacaggtcattaaggtactcctcaactcacgaaccaccagagcagaccccttaacctgttcaaaaactcaacccaccaataaccatatgcca 29685740  T
Q  122 aatttccaagacagag 137  Q
    |||| | |||||||||    
T  29685739 aattccaaagacagag 29685724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 18557550 - 18557451
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgcca 121  Q
    ||||||||||||| |||||| ||||||||||||||||| | ||||||||| ||||||||||||||| ||  ||||||| |||||||||| ||| ||||||    
T  18557550 actcccgacacaaatcaaaacggcacccctcaactcacgacccaccagagtagacaccttaacctgccc--aaactcggcccaccaatatcccaatgcca 18557453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 39368875 - 39368815
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacacctta 82  Q
    |||||||||||||||||||||| |||| |||||||||| ||||||||| | ||||||||||    
T  39368875 actcccgacacaagtcaaaaagacacctctcaactcacgaaccaccagggaagacacctta 39368815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 25341711 - 25341638
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaa 95  Q
    ||||||||||||  |||  ||||||||||| ||||||| || |||||||||||| |||||||| |||| |||||    
T  25341711 actcccgacacacatcatcaaggcacccctgaactcacgaagcaccagagcagaaaccttaacatgtcgaaaaa 25341638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 1e-42; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 38709966 - 38709851
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgcca 121  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  38709966 actcccgaaacaaggcaaaaaggcacccctcaactcacgaaccaccagaacaaacaccttaacctgtccaaaaactcgacccaccaataacccgatgcca 38709867  T
Q  122 aatttccaagacagag 137  Q
    || ||| |||||||||    
T  38709866 aaattcaaagacagag 38709851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 39908889 - 39909004
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgcca 121  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||    
T  39908889 actcacgacacaagtcaaaaaagcacccctcaactcacgaaccaccagagcatacacctaaacctgtccaaaaactcgatccaccaataacccgatgcca 39908988  T
Q  122 aatttccaagacagag 137  Q
    || | | |||||||||    
T  39908989 aaatccaaagacagag 39909004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 4391620 - 4391505
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgcca 121  Q
    |||||||||||||| |||||| |||||||||||||||| |||||||||| |||||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  4391620 actcccgacacaaggcaaaaatgcacccctcaactcacgaaccaccagaacagacaccttaacctgaccaaaacctcgacccaccaagaacccgatgcca 4391521  T
Q  122 aatttccaagacagag 137  Q
    || | | |||||||||    
T  4391520 aaatccaaagacagag 4391505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 13987632 - 13987531
Alignment:
Q  24 tcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaa 123  Q
    ||||||||||| |||  ||||||||||||||||||| |||||||||||||||||||  ||||| || ||||||||| | |||||| |||| |||||||||    
T  13987632 tcccgacacaaatcatcaaggcacccctcaactcacgaaccaccagagcagacaccaaaacctatctaaaaactcggctcaccaaaaacctgatgccaaa 13987533  T
Q  124 tt 125  Q
    ||    
T  13987532 tt 13987531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 28887767 - 28887701
Alignment:
Q  40 aaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccacc 106  Q
    |||||||||||||||||||  |||||||||||||||  ||||||| | |||||||||| | ||||||    
T  28887767 aaaggcacccctcaactcaagaaccaccagagcagatcccttaacttatccaaaaacttggcccacc 28887701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 38564898 - 38564815
Alignment:
Q  39 aaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaatt 125  Q
    ||||||||||||||||||||| | ||| | ||||| |||||| |||||||||  ||||||| |||||||| | || |||||||||||    
T  38564898 aaaaggcacccctcaactcacgacccatctgagcaaacacctaaacctgtcc--aaactcg-cccaccaaaatcctgatgccaaatt 38564815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 17891503 - 17891454
Alignment:
Q  43 ggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaa 92  Q
    ||||||||||||||||| | ||| ||||| ||||||||||||||| ||||    
T  17891503 ggcacccctcaactcacgatccatcagagaagacaccttaacctgcccaa 17891454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 4e-42; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 45181607 - 45181493
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgcca 121  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  45181607 actcccgacaaaagtcaaaaaggcacccctcaactcacgaaccaccagagcagacaccctaacctgtccaaaaactcgacccaccaataacccaatgcca 45181508  T
Q  122 aatttccaagacaga 136  Q
    || | | ||||||||    
T  45181507 aaatccaaagacaga 45181493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 16285092 - 16284978
Alignment:
Q  9 atcgacccgcaaaactcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaa 108  Q
    |||| ||| ||| ||||| ||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  16285092 atcggcccacaagactccagacactagtcaaaaaggcacccctcaactcacgaaccacaagagcagacaccttaacctgtccaaaaactcgacccaccaa 16284993  T
Q  109 taacccgatgccaaa 123  Q
    || | ||||||||||    
T  16284992 tagctcgatgccaaa 16284978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 9e-31
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 2782137 - 2782240
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgcca 121  Q
    |||| |||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |  |||||||    
T  2782137 actctcgacacaaatcattaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcggcccaccattatctagatgcca 2782236  T
Q  122 aatt 125  Q
    ||||    
T  2782237 aatt 2782240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 17324212 - 17324326
Alignment:
Q  9 atcgacccgcaaaactcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaa 108  Q
    |||| ||| ||| |||| ||||| |||| |||||||||||||||||||||| ||||||| ||| |||||||| ||||| |||||||||||||||||||||    
T  17324212 atcggcccacaagactcacgacataagtaaaaaaggcacccctcaactcacgaaccaccggagtagacacctaaacctatccaaaaactcgacccaccaa 17324311  T
Q  109 taacccgatgccaaa 123  Q
    |||||||||| ||||    
T  17324312 taacccgatgtcaaa 17324326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 3968618 - 3968721
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgcca 121  Q
    ||||||||||||| |||  ||||||||||||||||||| |||||||||||||||||||  || || || ||||||||| | |||||| |||| |||||||    
T  3968618 actcccgacacaaatcatcaaggcacccctcaactcacgaaccaccagagcagacaccaaaatctatctaaaaactcggctcaccaaaaaccagatgcca 3968717  T
Q  122 aatt 125  Q
    ||||    
T  3968718 aatt 3968721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 4000187 - 4000084
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgcca 121  Q
    ||||||||||||| |||  ||||||||||||||||||| |||||||||||||||||||  || || || ||||||||| | |||||| |||| |||||||    
T  4000187 actcccgacacaaatcatcaaggcacccctcaactcacgaaccaccagagcagacaccaaaatctatctaaaaactcggctcaccaaaaaccagatgcca 4000088  T
Q  122 aatt 125  Q
    ||||    
T  4000087 aatt 4000084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 18983276 - 18983175
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgcca 121  Q
    |||| |||||||  |||| |||||||| |||||||||||| ||||||||||| ||| || ||||  |  | ||||||| ||||||| || ||||||||||    
T  18983276 actctcgacacagatcaataaggcaccactcaactcacaacccaccagagcacacatctaaacccat--acaaactcggcccaccattatcccgatgcca 18983179  T
Q  122 aatt 125  Q
    ||||    
T  18983178 aatt 18983175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 7e-41; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 7e-41
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 1799152 - 1799044
Alignment:
Q  29 acacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaatttcc 128  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |     
T  1799152 acacaagtcaaaaaggcacccctcaactcacgaaccaccggagcagacaccttaacctatccaaaaactcgacccaccaataacccgatgccaaaatcca 1799053  T
Q  129 aagacagag 137  Q
    |||||||||    
T  1799052 aagacagag 1799044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 26500330 - 26500462
Alignment:
Q  9 atcgacccgcaaaactcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtcc--aaaaactcgacc--ca 104  Q
    |||||||| ||| ||| |||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||  ||||||||||||  ||    
T  26500330 atcgacccacaagacttccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacaccttaacctgtccaaaaaaactcgacccaca 26500429  T
Q  105 ccaataacccgatgccaaatttccaagacagag 137  Q
    ||||||||| ||||||||| ||| |||||||||    
T  26500430 ccaataacctgatgccaaaattcaaagacagag 26500462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 37707423 - 37707523
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgcca 121  Q
    ||||||||||||   ||||||||||||||||||||||| |||||||||||||||||||  || || ||||||||||||||||||||| |||| |||||||    
T  37707423 actcccgacacatagcaaaaaggcacccctcaactcacgaaccaccagagcagacaccaaaatctatccaaaaactcgacccaccaaaaaccagatgcca 37707522  T
Q  122 a 122  Q
    |    
T  37707523 a 37707523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 40813849 - 40813952
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgcca 121  Q
    ||||||||| ||| ||| |||||||||| |||| |||| |||||| ||||||||||||||||||| |||||||||||| |||||||  |||| |||||||    
T  40813849 actcccgacgcaaatcataaaggcacccttcaattcacgaaccactagagcagacaccttaacctatccaaaaactcggcccaccataaaccagatgcca 40813948  T
Q  122 aatt 125  Q
    ||||    
T  40813949 aatt 40813952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 10388587 - 10388473
Alignment:
Q  9 atcgacccgcaaaactcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaa 108  Q
    |||| ||| ||| |||| |||| |||||||||||| || |||||||||||| || ||| |||||||||||||| || ||||| |||||| |||||| |||    
T  10388587 atcggcccacaagactctcgacgcaagtcaaaaagacatccctcaactcacgaagcactagagcagacacctttacatgtcccaaaacttgacccatcaa 10388488  T
Q  109 taacccgatgccaaa 123  Q
    |||||||||||||||    
T  10388487 taacccgatgccaaa 10388473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 42 - 137
Target Start/End: Original strand, 17416597 - 17416692
Alignment:
Q  42 aggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaatttccaagacagag 137  Q
    |||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| ||||| |  ||||  |||||||||| | |||||||||    
T  17416597 aggcacccctcaactcacgaaccactagagtagacaccttaacctgtccaaaaactcggcccacaataaaccaaatgccaaattcctaagacagag 17416692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 42219036 - 42218980
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacac 78  Q
    |||||| ||| ||||| ||||| |||| |||||||||| ||||||||||||||||||    
T  42219036 actcccaacataagtcgaaaagacaccactcaactcacgaaccaccagagcagacac 42218980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 23040625 - 23040672
Alignment:
Q  76 caccttaacctgtccaaaaactcgacccaccaataacccgatgccaaa 123  Q
    |||||||||||||| ||||||||||||| |||| || |||||||||||    
T  23040625 caccttaacctgtctaaaaactcgaccctccaaaaatccgatgccaaa 23040672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 4e-39; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 38387931 - 38387830
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgcca 121  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||    
T  38387931 actcccgacataagtcaaaaaggcacccctcaactcacgaaccaccagagcaaacaccttaacctgtccaaaaactcgacccaccaataacctgatggca 38387832  T
Q  122 aa 123  Q
    ||    
T  38387831 aa 38387830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 46294 - 46396
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaacc-accagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgcc 120  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| | ||||||||||||||||||||||||||||||||||||| |    
T  46294 actcccgacacaagtcaaaaaggcacccctcaactcacgaacccaccggagcagacacataaacctgtccaaaaactcgacccaccaataacccgatgtc 46393  T
Q  121 aaa 123  Q
    |||    
T  46394 aaa 46396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 1579164 - 1579036
Alignment:
Q  9 atcgacccgcaaaactcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaa 108  Q
    |||| ||| ||| |||||| |||||||| ||| ||||| |||||||||||| |||||||||||||||||||| ||||| ||||||| || ||||| ||||    
T  1579164 atcggcccacaagactcccaacacaagtaaaagaggcatccctcaactcacgaaccaccagagcagacacctaaacctatccaaaaccttgacccgccaa 1579065  T
Q  109 taacccgatgccaaatttccaagacagag 137  Q
     ||| |||||||||| | | |||||||||    
T  1579064 gaacacgatgccaaaatccaaagacagag 1579036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 40531241 - 40531176
Alignment:
Q  28 gacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaa 93  Q
    ||||||| |||||| ||||||||||||||||  | |||||||||||||||||||||||||||||||    
T  40531241 gacacaaatcaaaacggcacccctcaactcaagacccaccagagcagacaccttaacctgtccaaa 40531176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 544405 - 544479
Alignment:
Q  9 atcgacccgcaaaactcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaa 83  Q
    |||||||| | | ||||||||||||| |||||| |||| || ||||||||||| |||||||||||||||||||||    
T  544405 atcgacccaccagactcccgacacaaatcaaaacggcatccgtcaactcacaatccaccagagcagacaccttaa 544479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 23264715 - 23264619
Alignment:
Q  26 ccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaa 123  Q
    ||||||||| | |||||| |||||||||| |  |||||| |||||||||||| || ||||| ||||||||||||||||||||||  | ||||||||||    
T  23264715 ccgacacaaattaaaaag-cacccctcaatttgcaaaccgccagagcagacatctaaacctatccaaaaactcgacccaccaatttctcgatgccaaa 23264619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 36796602 - 36796546
Alignment:
Q  38 aaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaa 94  Q
    |||||||||| ||||||||||| |||||||| || ||||||| ||| || |||||||    
T  36796602 aaaaaggcactcctcaactcacgaaccaccaaagtagacaccataatctatccaaaa 36796546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 4e-33; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 2570173 - 2570058
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgcca 121  Q
    ||||| |||||||||||||||||||||||||||||||| | | ||||||||| ||||||||| ||| |||||| ||||||||||||||||||||||||||    
T  2570173 actcctgacacaagtcaaaaaggcacccctcaactcacgagcaaccagagcaaacaccttaatctgaccaaaacctcgacccaccaataacccgatgcca 2570074  T
Q  122 aatttccaagacagag 137  Q
    || | | |||||||||    
T  2570073 aaatccaaagacagag 2570058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 27993604 - 27993718
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgcca 121  Q
    ||||||||||||| ||| |||| ||||||||||||||| ||||||||||||| ||||| |||||| |||||||||||| |||||||  | || |||||||    
T  27993604 actcccgacacaaatcataaagacacccctcaactcacgaaccaccagagcaaacaccataacctatccaaaaactcggcccaccataatccagatgcca 27993703  T
Q  122 aatttccaagacaga 136  Q
    ||||  |||||||||    
T  27993704 aattcacaagacaga 27993718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 46262187 - 46262290
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgcca 121  Q
    |||||| |||| | |||||||||||||||||||||||| || |||| ||| ||||||| ||| || |||||||||||| |||||||| | || |||||||    
T  46262187 actcccaacaccaatcaaaaaggcacccctcaactcacgaatcaccggagaagacaccataaactatccaaaaactcggcccaccaaaacccagatgcca 46262286  T
Q  122 aatt 125  Q
    ||||    
T  46262287 aatt 46262290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 35206761 - 35206860
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgcca 121  Q
    |||||| |||||| | ||||||| |||||||||||||  | |||||||||||||||||||||| |||||  ||| ||| |||||||||| ||| ||||||    
T  35206761 actcccaacacaaataaaaaagggacccctcaactcatgacccaccagagcagacaccttaacttgtcc--aaattcggcccaccaatatcccaatgcca 35206858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 6003387 - 6003328
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacacctt 81  Q
    ||||| ||||||| ||||||||||| | ||||| |||||||||||| |||||||||||||    
T  6003387 actcctgacacaaatcaaaaaggcatcactcaattcacaaaccaccggagcagacacctt 6003328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 1e-32; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 41958246 - 41958129
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccacca--ataacccgatgc 119  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  | ||||| ||  ||||||||||||    
T  41958246 actcctgacacaagtcaaaaaggcacccttcaactcacaaaccaccagagcagacaccttaacctgtccaaaaatccaacccatcaatataacccgatgc 41958147  T
Q  120 caaatttccaagacagag 137  Q
    |||| | | |||||||||    
T  41958146 caaaatccgaagacagag 41958129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 4397498 - 4397613
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgcca 121  Q
    |||||||| | ||||||||| ||||||||||||||||| |||||||| ||||||||| | ||| ||||||||||||||||||||||||||| | ||||||    
T  4397498 actcccgagagaagtcaaaatggcacccctcaactcacgaaccaccatagcagacacataaacttgtccaaaaactcgacccaccaataactctatgcca 4397597  T
Q  122 aatttccaagacagag 137  Q
    || | | |||||||||    
T  4397598 aaatccaaagacagag 4397613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 42048284 - 42048399
Alignment:
Q  22 actcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgcca 121  Q
    |||||||||| || |||| |||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||| || || || ||||    
T  42048284 actcccgacagaaatcaacaaggcacctctcaactcacgaaccaccagagcagacaccttaacatgtccaaaaactcggcccaccattatccagaggcca 42048383  T
Q  122 aatttccaagacagag 137  Q
    |||| | |||||||||    
T  42048384 aattcctaagacagag 42048399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 37128998 - 37129105
Alignment:
Q  29 acacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaatttcc 128  Q
    ||||||||||||||||||||  ||||||||| |||||||||||||||||||| ||||||||||||||||| ||| ||||| || |||||| |||| | |     
T  37128998 acacaagtcaaaaaggcacctatcaactcacgaaccaccagagcagacacctgaacctgtccaaaaactcaaccaaccaaaaatccgatgtcaaaatcca 37129097  T
Q  129 aagacaga 136  Q
    ||||||||    
T  37129098 aagacaga 37129105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 44888385 - 44888473
Alignment:
Q  20 aaactcccgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaata 110  Q
    |||||||||||| || |||| ||||||||||||||||||| | |||||||||||||||| | |||||||||  ||||||| ||||||||||    
T  44888385 aaactcccgacataaatcaataaggcacccctcaactcacgacccaccagagcagacacgtaaacctgtcc--aaactcggcccaccaata 44888473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 9560861 - 9560959
Alignment:
Q  27 cgacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaatt 125  Q
    |||||||| |||  ||||||||||||||||||| ||| ||||||||||||||| |||| | |||||||||||  |||||||| | |  |||||||||||    
T  9560861 cgacacaaatcatcaaggcacccctcaactcacgaactaccagagcagacaccataacttatccaaaaactcagcccaccaaaatctagatgccaaatt 9560959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 4162107 - 4162162
Alignment:
Q  42 aggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaact 97  Q
    |||||||||||||||| | ||||||||||||| |||||| ||||| ||||| ||||    
T  4162107 aggcacccctcaactctcgaaccaccagagcatacacctcaacctatccaacaact 4162162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 1e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 7546513 - 7546580
Alignment:
Q  38 aaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccac 105  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||    
T  7546513 aaaaaggcacccctcaactcacgaaccaccagagcagacaccataacctatccaaaaactcgacccac 7546580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 12129225 - 12129130
Alignment:
Q  28 gacacaagtcaaaaaggcacccctcaactcacaaaccaccagagcagacaccttaacctgtccaaaaactcgacccaccaataacccgatgccaaatt 125  Q
    ||||||| | || ||||||||| ||||||||| | ||||||||| |||||||| ||| ||||||||  |||| ||||||| || ||||||||||||||    
T  12129225 gacacaaattaataaggcacccatcaactcacgacccaccagagaagacacctaaacttgtccaaa--ctcggcccaccattatcccgatgccaaatt 12129130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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