View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5800-13 (Length: 76)
Name: Solexa-NF5800-13
Description: NF5800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5800-13 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 68; Significance: 4e-31; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-31
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8777875 - 8777800
Alignment:
| Q |
1 |
atagatataagagataccatttttatatttttcgcaatatctctaaacatgattcgtcacgccaaggctgaaacct |
76 |
Q |
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| T |
8777875 |
atagatataagagatgccatttttatattttttgcaatatctctaaacatgattcgtcacgccaaggctgaaacct |
8777800 |
T |
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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 8784621 - 8784550
Alignment:
| Q |
2 |
tagatataagagataccatttttatatttttcgcaatatctctaaacatgattcgtcacgccaaggctgaaa |
73 |
Q |
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| T |
8784621 |
tagatataagagatttcaattttaaatttttcgcattaactccaaacatgactcgtcaagccaaggctgaaa |
8784550 |
T |
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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 8790697 - 8790626
Alignment:
| Q |
2 |
tagatataagagataccatttttatatttttcgcaatatctctaaacatgattcgtcacgccaaggctgaaa |
73 |
Q |
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| T |
8790697 |
tagatataagagattccaattttacagttttcgcattaactccaaacaagactcgtcaagccaaggctgaaa |
8790626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 9584188 - 9584254
Alignment:
| Q |
5 |
atataagagataccatttttatatttttc-gcaatatctctaaacatgattcgtcacgccaaggctg |
70 |
Q |
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| T |
9584188 |
atataagtgattccatttttacatttttttgtaatatctctaatcatgattcgtcaagccaaggctg |
9584254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 2539905 - 2539976
Alignment:
| Q |
2 |
tagatataagagataccatttttatatttttcgcaatatctctaaacatgattcgtcacgccaaggctgaaa |
73 |
Q |
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| T |
2539905 |
tagatataaaagattccatttttacattttccgcaatatctccaaacatgtttcgtcacgccaaggctgaaa |
2539976 |
T |
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