View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5801-1 (Length: 257)
Name: Solexa-NF5801-1
Description: NF5801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5801-1 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 36908903 - 36908717
Alignment:
| Q |
1 |
agatgacagcagtggaagaaattgtaagataggaaaacgttaaaagtagagaatctgaaacgtcaaatcagttaagtaggtggggtgcatgtgtgacttg |
100 |
Q |
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| T |
36908903 |
agatgacagcagtggaagaaattgtaagataggaaaacgttaaaagtagagaatctgaaacgtcaaatcagttaagtaggtggggtgcatgtgtgacttg |
36908804 |
T |
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| Q |
101 |
gatcttgttggaaacaaagaaagatagctagatagatgtgtgacttgactttaatctttgtttgcagaaaacaataataaatgaatg |
187 |
Q |
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| T |
36908803 |
gatcttgttggaaacaaagaaagatagctagatagatgtgtgacttgactttaatctttgtttgcagaaaacaataataaatgaatg |
36908717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 36908686 - 36908635
Alignment:
| Q |
206 |
gtatcaattcggactgtcacttacattgttgccaattttttagtaggaccct |
257 |
Q |
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| T |
36908686 |
gtatcaattcggactgtcacttacattgttgccaattttttagtaggaccct |
36908635 |
T |
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