View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5801-12 (Length: 137)
Name: Solexa-NF5801-12
Description: NF5801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5801-12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 4e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 49862961 - 49862825
Alignment:
| Q |
1 |
agcagagagggaggaagggtgattggctttaaagtaatactccttgagtcttgctggttcaagttgacgtaaaacagaacaatacgatgaatttagccac |
100 |
Q |
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| T |
49862961 |
agcagagagggaggaagggtgattggctttaaagtaatactccttgagtcttgctgattcaagttgacgtaaaacagaacaatacgatgaatttagccac |
49862862 |
T |
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| Q |
101 |
ttgaaatcatcaatattctgaaaatcaatggttgctt |
137 |
Q |
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| T |
49862861 |
ttgaaatcatcaatattctgaacatcaatggttgctt |
49862825 |
T |
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