View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5801-16 (Length: 128)
Name: Solexa-NF5801-16
Description: NF5801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5801-16 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 3e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 3e-61
Query Start/End: Original strand, 6 - 128
Target Start/End: Original strand, 24269675 - 24269797
Alignment:
| Q |
6 |
catgagctaccctattccctgatcgtaaacaaaaaagtacaactataaaaacacctcttcatcttcctaatgcttctcacaaaacaccctgaatgcctaa |
105 |
Q |
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| T |
24269675 |
catgagctaccctattccctgatcgtaaacaaaaaagtacaactataaaaacacctcttcatcttcctaatgcttctcacaaaactccctgaatgcctaa |
24269774 |
T |
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| Q |
106 |
gtgaaagtgaaatgttcatcttc |
128 |
Q |
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| T |
24269775 |
gtgaaagtgaaatgttcatcttc |
24269797 |
T |
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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 24269789 - 24269841
Alignment:
| Q |
63 |
ttcatcttcctaatgcttctcacaaaacaccctgaatgcctaagtgaaagtgaa |
116 |
Q |
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| T |
24269789 |
ttcatcttccta-tgcttctcacaaaactcccaaaaggcctaagtgaaagtgaa |
24269841 |
T |
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