View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5801-17 (Length: 127)
Name: Solexa-NF5801-17
Description: NF5801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5801-17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 2e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 5995346 - 5995465
Alignment:
| Q |
8 |
gccatggccggttttcgttcttttgtcgggaaaaacgcaaacttgcagggcgtagagttaactgctgacgatgtggctaatgccgtgctcttccttgcaa |
107 |
Q |
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| T |
5995346 |
gccatggctggttttcgttcttttgtcgggaaaaacgcaaacttgcagggcgtagagttaactgctgacgatgtggctaatgccgtgctcttccttgcaa |
5995445 |
T |
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| Q |
108 |
gtgatgatgcaaagtatata |
127 |
Q |
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| T |
5995446 |
gtgatgatgcaaagtatata |
5995465 |
T |
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