View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5801-22 (Length: 91)
Name: Solexa-NF5801-22
Description: NF5801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5801-22 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 53; Significance: 5e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-22
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 4713266 - 4713214
Alignment:
| Q |
11 |
agaagcacaactccgaatgagtacacgtcagacttaagagtcaacttgtttcg |
63 |
Q |
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| T |
4713266 |
agaagcacaactccgaatgagtacacgtcagacttaagagtcaacttgtttcg |
4713214 |
T |
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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 4785035 - 4784991
Alignment:
| Q |
11 |
agaagcacaactccgaatgagtacacgtcagacttaagagtcaac |
55 |
Q |
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| T |
4785035 |
agaagcacaacaccgaaagagtacacatcagactttagagtcaac |
4784991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 4817464 - 4817421
Alignment:
| Q |
11 |
agaagcacaactccgaatgagtacacgtcagacttaagagtcaa |
54 |
Q |
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| T |
4817464 |
agaagcacaacaccgaaagagtacacatcagactttagagtcaa |
4817421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 91
Target Start/End: Original strand, 14260637 - 14260670
Alignment:
| Q |
58 |
gtttcgcatcacattccgtgtgactgacaacaca |
91 |
Q |
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| T |
14260637 |
gtttcgcatcacattccatgtgactgacaacaca |
14260670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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