View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5801-3 (Length: 239)
Name: Solexa-NF5801-3
Description: NF5801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5801-3 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 30408905 - 30409127
Alignment:
| Q |
8 |
ccaagggtcttgcatttctacacagtgatgaagtgggaaagatacatggagacttcaaaacttcgaaaatcttgattgattcagtaagtggattcattga |
107 |
Q |
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| T |
30408905 |
ccaagggtcttgcatttctacacagtgataaagtgggaaagatacatggagacttcaaaacttcgaaaatcttgattggttcagtaagtggattcattga |
30409004 |
T |
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| Q |
108 |
ttttacaagcttagagatggatcgttaattagttaatcaagtttgtaaatttgtttatgtgaatgacagaactacaatgcaaaactattctttcttgggt |
207 |
Q |
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| T |
30409005 |
ttttacaagcttagagatggatcgttaattagttaatcaagtttgtaaatttgtttatgtgaatgacagaactacaatgcaaaactattatttcttgggt |
30409104 |
T |
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| Q |
208 |
ttttaaaagttagatcagatagt |
230 |
Q |
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| T |
30409105 |
ttttaaaagttagatcagatagt |
30409127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 30405068 - 30405260
Alignment:
| Q |
10 |
aagggtcttgcatttctacacagtgatgaagtgggaaagatacatggagacttcaaaacttcgaaaatcttgattgattcagtaagtggattcattgatt |
109 |
Q |
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| T |
30405068 |
aagggtcttgcatttcttcacagtgatgaagtgaatgtgatacatggaaacttgaaaacttctaaaatcttgattgattctgtaagttgattagttgatt |
30405167 |
T |
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| Q |
110 |
tt------acaagcttagagatggatcgttaattagttaatcaa-gtttgtaaatttgtttatgtgaatgacagaactacaatgcaaaactat |
195 |
Q |
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| T |
30405168 |
ttacactaacaagcttagagatggagagtttgctagtttcacaaggtttataaattcctttatgtcaatgacagaaccacaatgcaaaactat |
30405260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 30422110 - 30422201
Alignment:
| Q |
10 |
aagggtcttgcatttctacacagtgatgaagtgggaaagatacatggagacttcaaaacttcgaaaatcttgattgattcagtaagtggatt |
101 |
Q |
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| T |
30422110 |
aagggtcttgcatttcttcacagtgatgaagtcgaagtgatatatcgagacttcaaaacttctaacatcttgattgattctgtaagtggatt |
30422201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 30401707 - 30401818
Alignment:
| Q |
10 |
aagggtcttgcatttctacacagtgatgaagtgggaaagatacatggagacttcaaaacttcgaaaatcttgattgattcagtaagtggattc--attga |
107 |
Q |
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| T |
30401707 |
aagggtcttgcatttcttcacagtgaaaaagtgaatgtgatacatggagatttcaatacttctaatatcctgattgattctgtaagtggattcatattga |
30401806 |
T |
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| Q |
108 |
ttttacaagctt |
119 |
Q |
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| T |
30401807 |
tcttacaagctt |
30401818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 31445797 - 31445909
Alignment:
| Q |
10 |
aagggtcttgcatttctacacagtgatgaagtgggaaagatacatggagacttcaaaacttcgaaaatcttgattgattcagtaagtggattcattgatt |
109 |
Q |
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||||||||||||||||| |||| ||||||||| | |||||| ||||| || ||||| || || |||||||||||||||||||||| ||| ||||||| |
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| T |
31445797 |
aagggtcttgcatttcttcacatcgatgaagtgaatatgatacacggagaatttaaaacatctaagatcttgattgattcagtaagtgaatttattgatt |
31445896 |
T |
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| Q |
110 |
ttacaagcttaga |
122 |
Q |
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| T |
31445897 |
ttacaagcttaga |
31445909 |
T |
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