View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5801-7 (Length: 180)
Name: Solexa-NF5801-7
Description: NF5801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5801-7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 2e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-47
Query Start/End: Original strand, 84 - 180
Target Start/End: Original strand, 8567286 - 8567382
Alignment:
| Q |
84 |
cawagggttattgtgatagcttcagtccacaatgaaattgtgtccaccaaaatatttaagtcccccaaagccatttcttctcctcccttctaaactc |
180 |
Q |
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| T |
8567286 |
caaagggttattgtgatagcttcagtccacaatgaaattgtgtccaccaaaatatttaagtcccccaaagccatttcttctcctcccttctaaactc |
8567382 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 46307695 - 46307739
Alignment:
| Q |
8 |
ccaaccaatgaggcattagattatagacttggtcacttgtctgatc |
53 |
Q |
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| T |
46307695 |
ccaaccaatgag-cattagattatagacttggtcacttgtctgatc |
46307739 |
T |
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