View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5801-8 (Length: 152)
Name: Solexa-NF5801-8
Description: NF5801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5801-8 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 2e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 40058736 - 40058839
Alignment:
| Q |
8 |
ccttgacccaacaaaactcgtcccacatgtctatcttcctagtagatgaaccactctcttatttgggaacatatgaaatgtacatcgagaatcaataacc |
107 |
Q |
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| T |
40058736 |
ccttgacccaacaaaacttgtcccacatgtctatcttcctagtagatgaaccactctcttatttgggaacatatgaaatgtacaacgagaatcaataacc |
40058835 |
T |
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| Q |
108 |
catt |
111 |
Q |
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|||| |
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| T |
40058836 |
catt |
40058839 |
T |
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Target: chr4; HSP #2
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 40059056 - 40059112
Alignment:
| Q |
96 |
gaatcaataacccattcatgatgagttttatcttcaaggtatactccttcttaagat |
152 |
Q |
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| T |
40059056 |
gaatcaataacccattcatgatgagttttatcttcaaggtatactccttcttaagat |
40059112 |
T |
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