View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5801-9 (Length: 142)
Name: Solexa-NF5801-9
Description: NF5801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5801-9 |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 2e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 2e-65
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 37416626 - 37416763
Alignment:
| Q |
4 |
atgaatgtgcaagagtaacaagcacttactgatattccaatgttcccaagtgttttagcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaa |
103 |
Q |
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| T |
37416626 |
atgaatgtgcaagagtaacaagcatttactgatattccaatgttcccaagtgttctagcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaa |
37416725 |
T |
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| Q |
104 |
gagcatctatagaatggaagcaagtgcagaaacaacca |
141 |
Q |
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| T |
37416726 |
gagcatctatagaatggaagcaagtgtagaaacaacca |
37416763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 2e-65
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 37424158 - 37424295
Alignment:
| Q |
4 |
atgaatgtgcaagagtaacaagcacttactgatattccaatgttcccaagtgttttagcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaa |
103 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37424158 |
atgaatgtgcaagagtaacaagcatttactgatattccaatgttcccaagtgttctagcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaa |
37424257 |
T |
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| Q |
104 |
gagcatctatagaatggaagcaagtgcagaaacaacca |
141 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |
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| T |
37424258 |
gagcatctatagaatggaagcaagtgtagaaacaacca |
37424295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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