View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5802-1 (Length: 215)
Name: Solexa-NF5802-1
Description: NF5802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5802-1 |
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| [»] chr6 (5 HSPs) |
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| [»] scaffold0427 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 13008466 - 13008673
Alignment:
| Q |
8 |
gaatctacgtgcaacccaagtccactctatggaatattcaagcatagataaagagcttaatttgtttcaaaaacatgtatctgataggttcaatgaacta |
107 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13008466 |
gaatctacgtgccacccaagtccactctatggaatattcaagcatagataaagagcttaatttgtttcaaaaacatgtatctgataggttcaatgaacta |
13008565 |
T |
|
| Q |
108 |
tcatctatttcaaatgataatttgttatctctttcttgggttagtaaggttcttgacacattcctttgttgccaagaggaattcaagatgattctacaca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13008566 |
tcatctatttcaaatgataatttgttatctctttcttgggttagtaagcttcttgacacattcctttgttgccaagaggaattcaagatgattctacaca |
13008665 |
T |
|
| Q |
208 |
acaataga |
215 |
Q |
| |
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|||||||| |
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| T |
13008666 |
acaataga |
13008673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 12997227 - 12997434
Alignment:
| Q |
8 |
gaatctacgtgcaacccaagtccactctatggaatattcaagcatagataaagagcttaatttgtttcaaaaacatgtatctgataggttcaatgaacta |
107 |
Q |
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|||||||||||| || ||||| ||||| |||||| |||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12997227 |
gaatctacgtgccacacaagttcactcaatggaaaattcaaccttagataaagagcttaatttgtttcaaaaacatgtaactgataggttcaatgaacta |
12997326 |
T |
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| Q |
108 |
tcatctatttcaaatgataatttgttatctctttcttgggttagtaaggttcttgacacattcctttgttgccaagaggaattcaagatgattctacaca |
207 |
Q |
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| T |
12997327 |
tcatctattgcaaataatgatttgttatctctttcttgggttagtaagcttcttgacacattcctttgttgccaagaggaattcaagatgattctacaca |
12997426 |
T |
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| Q |
208 |
acaataga |
215 |
Q |
| |
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|||||||| |
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| T |
12997427 |
acaataga |
12997434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 12976067 - 12976274
Alignment:
| Q |
8 |
gaatctacgtgcaacccaagtccactctatggaatattcaagcatagataaagagcttaatttgtttcaaaaacatgtatctgataggttcaatgaacta |
107 |
Q |
| |
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|||||||||||| || ||||| || || ||| ||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12976067 |
gaatctacgtgccactcaagttcattcaatgcaatattcaagcttagacaaagagcttgatttgtttcaaaaacatgtatctgataggttcaatgaacta |
12976166 |
T |
|
| Q |
108 |
tcatctatttcaaatgataatttgttatctctttcttgggttagtaaggttcttgacacattcctttgttgccaagaggaattcaagatgattctacaca |
207 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12976167 |
tcatctatttcaaatgataatttcttatctctttcttgggttagaaagcttcttgacacattcctttgttgccaagaggaattcaagatgattttacaca |
12976266 |
T |
|
| Q |
208 |
acaataga |
215 |
Q |
| |
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|| ||||| |
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| T |
12976267 |
accataga |
12976274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 13030822 - 13031029
Alignment:
| Q |
8 |
gaatctacgtgcaacccaagtccactctatggaatattcaagcatagataaagagcttaatttgtttcaaaaacatgtatctgataggttcaatgaacta |
107 |
Q |
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|||||||||||| || ||||| ||||| |||||| |||||| | |||||||||| |||| ||||||||||||||||||| |||||||||||||||| ||| |
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| T |
13030822 |
gaatctacgtgccacacaagttcactcaatggaaaattcaaccttagataaagaacttagtttgtttcaaaaacatgtaactgataggttcaatgagcta |
13030921 |
T |
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| Q |
108 |
tcatctatttcaaatgataatttgttatctctttcttgggttagtaaggttcttgacacattcctttgttgccaagaggaattcaagatgattctacaca |
207 |
Q |
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|| | |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13030922 |
tctttagtttcaaatgataatttgttatccctttcttgggttagtaagcttcttgacacattcctttgttgccaagaggaattcaagatgattctacaca |
13031021 |
T |
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| Q |
208 |
acaataga |
215 |
Q |
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|| ||||| |
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| T |
13031022 |
accataga |
13031029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 13012026 - 13012232
Alignment:
| Q |
9 |
aatctacgtgcaacccaagtccactctatggaatattcaagcatagataaagagcttaatttgtttcaaaaacatgtatctgataggttcaatgaactat |
108 |
Q |
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||||||| ||| || ||||| ||||| |||||| |||||| | ||||||||||||||| |||||||||||||||||| |||||||||||||||| |||| |
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| T |
13012026 |
aatctacatgccactcaagttcactcaatggaaaattcaaccttagataaagagcttagcttgtttcaaaaacatgtaactgataggttcaatgagctat |
13012125 |
T |
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| Q |
109 |
catctatttcaaatgataatttgttatctctttcttgggttagtaaggttcttgacacattcctttgttgccaagaggaattcaagatgattctacacaa |
208 |
Q |
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| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13012126 |
ctttagtttcaaatgataatttgttatctctttcttgggttagtaagcttcttgacacattcctttgttgccaagaggaattcaagatgattctacacaa |
13012225 |
T |
|
| Q |
209 |
caataga |
215 |
Q |
| |
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| ||||| |
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| T |
13012226 |
ccataga |
13012232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0427
Description:
Target: scaffold0427; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 7469 - 7548
Alignment:
| Q |
24 |
caagtccactctatggaatattcaagcatagataaagagcttaatttgtttcaaaaacatgtatctgataggttcaatgaa |
104 |
Q |
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||||||||||| || ||| |||||||| |||| ||| |||||||||||||| | ||| ||||| |||| | |||||||||| |
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| T |
7469 |
caagtccactcaatagaaaattcaagcttagaaaaatagcttaatttgttttagaaa-atgtaactgacacgttcaatgaa |
7548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 3385863 - 3385942
Alignment:
| Q |
24 |
caagtccactctatggaatattcaagcatagataaagagcttaatttgtttcaaaaacatgtatctgataggttcaatgaa |
104 |
Q |
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||||||||||| || ||| |||||||| |||| ||| |||||||||||||| | ||| ||||| |||| | |||||||||| |
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| T |
3385863 |
caagtccactcaatagaaaattcaagcttagaaaaatagcttaatttgttttagaaa-atgtaactgacacgttcaatgaa |
3385942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 4296485 - 4296406
Alignment:
| Q |
24 |
caagtccactctatggaatattcaagcatagataaagagcttaatttgtttcaaaaacatgtatctgataggttcaatgaa |
104 |
Q |
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||||||||||| || ||| |||||||| |||| ||| |||||||||||||| | ||| ||||| |||| | |||||||||| |
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| T |
4296485 |
caagtccactcaatagaaaattcaagcttagaaaaatagcttaatttgttttagaaa-atgtaactgacacgttcaatgaa |
4296406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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