View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5802-10 (Length: 120)
Name: Solexa-NF5802-10
Description: NF5802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5802-10 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 77; Significance: 3e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 3e-36
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 3642669 - 3642593
Alignment:
| Q |
7 |
aacaattagacatagccttaaaccgtagaaaattgttgaatcttgctacctcactatttgaaagaaaacacatgtta |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3642669 |
aacaattagacatagccttaaaccgtagaaaattgttgaatcttgctacctcactatttgaaagaaaacacatgtta |
3642593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 39543173 - 39543075
Alignment:
| Q |
22 |
ccttaaaccgtagaaaattgttgaatcttgctacctcactatttgaaagaaaacacatgttagcatacataaattcatctatagaatttaagttacttg |
120 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||| || |||| ||||||||| || ||| | || |||||||||| |
|
|
| T |
39543173 |
ccttaaactgtttaaaattgttgaatcttgctacctcacaatttgaaagaaaacacatattggcatgcataaattcgtccatatagttcaagttacttg |
39543075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 18075222 - 18075142
Alignment:
| Q |
35 |
aaaattgttgaatcttgctacctcactatttgaaagaaaacacatgttagcatacataaattcatctatagaatttaagtt |
115 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||||||||| |||||| ||||| || ||||||||||||||||||| ||||| |
|
|
| T |
18075222 |
aaaattgttggatcttgctatctcacgatttgaaagaagtcacatggtagcacacgtaaattcatctatagaattcaagtt |
18075142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University