View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5802-12 (Length: 105)

Name: Solexa-NF5802-12
Description: NF5802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5802-12
Solexa-NF5802-12
[»] chr2 (2 HSPs)
chr2 (8-101)||(37881302-37881395)
chr2 (16-101)||(2892261-2892346)
[»] chr4 (6 HSPs)
chr4 (13-73)||(36246539-36246599)
chr4 (12-67)||(31941926-31941981)
chr4 (12-67)||(32000885-32000940)
chr4 (41-74)||(24358428-24358461)
chr4 (31-86)||(27808553-27808608)
chr4 (31-74)||(53557723-53557766)
[»] chr3 (3 HSPs)
chr3 (31-74)||(20732618-20732661)
chr3 (31-74)||(20740354-20740397)
chr3 (25-86)||(44674739-44674800)
[»] chr8 (4 HSPs)
chr8 (31-77)||(9622084-9622130)
chr8 (25-71)||(39916906-39916952)
chr8 (34-74)||(41350395-41350435)
chr8 (34-73)||(7195700-7195739)
[»] chr7 (1 HSPs)
chr7 (31-74)||(28944891-28944934)
[»] chr1 (3 HSPs)
chr1 (35-74)||(17118247-17118286)
chr1 (35-75)||(38720068-38720108)
chr1 (31-91)||(45594286-45594346)


Alignment Details
Target: chr2 (Bit Score: 90; Significance: 5e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 5e-44
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 37881302 - 37881395
Alignment:
Q  8 gaagtagtcttttcctaatgtgcgtgttccagtagttctttatttcattgtctgttcttccgggtaatctagcagctatagcagacaacctata 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37881302 gaagtagtcttttcctaatgtgcgtgttccagtagttctttatttcattgtctgttcttccgggtaatctagcagctatagcagaccacctata 37881395  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 2892261 - 2892346
Alignment:
Q  16 cttttcctaatgtgcgtgttccagtagttctttatttcattgtctgttcttccgggtaatctagcagctatagcagacaacctata 101  Q
    |||||||||||||| |||||||| ||||| |||||||||||||| || ||||| ||||||| ||  || || |||||| |||||||    
T  2892261 cttttcctaatgtgtgtgttccaatagttttttatttcattgtccgtccttcctggtaatcgagatgcaattgcagaccacctata 2892346  T

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Target: chr4 (Bit Score: 41; Significance: 0.000000000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 36246599 - 36246539
Alignment:
Q  13 agtcttttcctaatgtgcgtgttccagtagttctttatttcattgtctgttcttccgggta 73  Q
    ||||||||||||||||| |||||||| || ||||| |||||||||||||||||||| ||||    
T  36246599 agtcttttcctaatgtgagtgttccaataattcttgatttcattgtctgttcttcctggta 36246539  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 31941981 - 31941926
Alignment:
Q  12 tagtcttttcctaatgtgcgtgttccagtagttctttatttcattgtctgttcttc 67  Q
    |||||||||| | | ||| ||||||||||||||||| |||||||||||||||||||    
T  31941981 tagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttc 31941926  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 32000940 - 32000885
Alignment:
Q  12 tagtcttttcctaatgtgcgtgttccagtagttctttatttcattgtctgttcttc 67  Q
    |||||||||| | | ||| ||||||||||||||||| |||||||||||||||||||    
T  32000940 tagtcttttcttgaggtgtgtgttccagtagttcttgatttcattgtctgttcttc 32000885  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 24358428 - 24358461
Alignment:
Q  41 agttctttatttcattgtctgttcttccgggtaa 74  Q
    ||||||| ||||||||||||||||||||||||||    
T  24358428 agttcttgatttcattgtctgttcttccgggtaa 24358461  T

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Target: chr4; HSP #5
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 27808608 - 27808553
Alignment:
Q  31 gtgttccagtagttctttatttcattgtctgttcttccgggtaatctagcagctat 86  Q
    |||||||| || |||||||| ||||| ||||||||||| ||||||||  |||||||    
T  27808608 gtgttccaataattctttatctcattatctgttcttcctggtaatcttccagctat 27808553  T

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Target: chr4; HSP #6
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 53557766 - 53557723
Alignment:
Q  31 gtgttccagtagttctttatttcattgtctgttcttccgggtaa 74  Q
    |||||||| ||||| ||||| ||||||||||||||||| |||||    
T  53557766 gtgttccaatagttttttatgtcattgtctgttcttccaggtaa 53557723  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 20732618 - 20732661
Alignment:
Q  31 gtgttccagtagttctttatttcattgtctgttcttccgggtaa 74  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  20732618 gtgttccagtagttctttatttcattgtctgttcttccaggtaa 20732661  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 20740354 - 20740397
Alignment:
Q  31 gtgttccagtagttctttatttcattgtctgttcttccgggtaa 74  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  20740354 gtgttccagtagttctttatttcattgtctgttcttccaggtaa 20740397  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 44674800 - 44674739
Alignment:
Q  25 atgtgcgtgttccagtagttctttatttcattgtctgttcttccgggtaatctagcagctat 86  Q
    ||||| ||||||||||| ||||| || ||||| ||||||||||| |||||||||||||||||    
T  44674800 atgtgagtgttccagtaattcttgatctcattatctgttcttcctggtaatctagcagctat 44674739  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 9622130 - 9622084
Alignment:
Q  31 gtgttccagtagttctttatttcattgtctgttcttccgggtaatct 77  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||    
T  9622130 gtgttccagtagttctttatttcattgtctgttcgtcctggtaatct 9622084  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 39916952 - 39916906
Alignment:
Q  25 atgtgcgtgttccagtagttctttatttcattgtctgttcttccggg 71  Q
    ||||| |||||||| |||||||| || ||||||||||||||||||||    
T  39916952 atgtgagtgttccaatagttcttgatctcattgtctgttcttccggg 39916906  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 41350395 - 41350435
Alignment:
Q  34 ttccagtagttctttatttcattgtctgttcttccgggtaa 74  Q
    |||||||| ||||||||||||||||||||||| || |||||    
T  41350395 ttccagtaattctttatttcattgtctgttctaccaggtaa 41350435  T

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Target: chr8; HSP #4
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 7195739 - 7195700
Alignment:
Q  34 ttccagtagttctttatttcattgtctgttcttccgggta 73  Q
    |||||||||||||| |||||||||||||||| ||| ||||    
T  7195739 ttccagtagttcttgatttcattgtctgttcgtcctggta 7195700  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 28944891 - 28944934
Alignment:
Q  31 gtgttccagtagttctttatttcattgtctgttcttccgggtaa 74  Q
    ||||||||  |||||||||| |||||||||||||||||||||||    
T  28944891 gtgttccaaaagttctttatctcattgtctgttcttccgggtaa 28944934  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 17118247 - 17118286
Alignment:
Q  35 tccagtagttctttatttcattgtctgttcttccgggtaa 74  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  17118247 tccagtaattctttatttcattgtctgttcttcctggtaa 17118286  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 38720108 - 38720068
Alignment:
Q  35 tccagtagttctttatttcattgtctgttcttccgggtaat 75  Q
    |||| |||||||||||||||||||| |||||||| ||||||    
T  38720108 tccaatagttctttatttcattgtcggttcttcccggtaat 38720068  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 45594286 - 45594346
Alignment:
Q  31 gtgttccagtagttctttatttcattgtctgttcttccgggtaatctagcagctatagcag 91  Q
    |||||||| |||||||| || ||||||||||||||||| |||| |  ||| ||||||||||    
T  45594286 gtgttccaatagttcttaatctcattgtctgttcttcctggtagttgagctgctatagcag 45594346  T

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